BAC Information

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BAC

Clone NameMSMg01-166M04
Chromosome13 (Build37)
Map Location 48,755,623 - 48,936,288
singlet/doubletdoublet
Overlap geneBarx1, Phf2
Upstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874
Downstream geneEG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166M04.T7 (MSMg01no166_m04.b1)MSMg01-166M04.TJ (MSMg01no166_m04.g1)
ACCAG364483AG364484
length740751
length of high quality
(start - end)
314 (50 - 363)351 (77 - 427)
definitionCHROMAT_FILE: MSMg01no166_m04.b1 PHD_FILE: MSMg01no166_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:21 2005CHROMAT_FILE: MSMg01no166_m04.g1 PHD_FILE: MSMg01no166_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,935,978 - 48,936,288)(48,755,623 - 48,755,973)
sequence
CTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTGACAGACAAGTCAGAGTCAGACCCATTGCACAGACTCC
ATGGTGGTGTGAAGACTTCCTGGCCCGTACGAATGCTTCGTGGCTCGTGT
GAGTGTGGTGTGGCCAGTGTGAATGCTCTGTGGTTGGTGAGTACTCTCTA
GCTTATGTAAAGGCTGCGGCATGGCTGCTGTGCTCATTCTATGGCTGCTG
TGACTCCTCCATACCTGGTATGGATGCTCCATGGCTGGTGTGGATTCTCC
ATGGCAGTGTAAAGTGCTTCAAAGCTGTTATGAGTGCTCCATAGCACCTG
TGAATCCTCTATGTTTTTTGTCCCCCCTCCCCCCCCAGTGTAAAATACTG
GCCATAGCTGGTGCAAACCCCCCCATGAAAAAAGAGAATTCTCAATGGCC
GGTGTGAATACTCTGTGGCTAGTGTGAACACTCTATGGTTGGTGTGAACA
CTCTGTGGCCAGTGAAGATGCTCCTAAGTGTACTGCATATTCTATACCAC
CATGTTCTTGTTCCATACTCATTTTTTCTCCTCTTTTTGTTATTCCCTCT
TCCTCCTCTTTTTCTTTTTCTGCCCCCCCACTTGCTTCCCCTCCTCTCCA
CTTATTTGTTATCGACTTTTTTTTGTTCACTCCTCCTGTATTATTTTTTT
CTCTGTAAACTCCTTCCCCCTTTATGTTTTCTCTCCATCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACAAAGGATCCCTGAAGCCA
TTTCTTCGCAATTTTTTTTTCGCCTAAAAGGGGTTTATTCGCAGGTTTGC
TTTAGGGTCCCTCTGGACTTTGAGAAGAATGTAGTTTGAAAAGGATGCGT
CAGGGGCTCGAGCTTAAAGAGGGCATGGGGCATCGGGGCATAGCCTGGCT
CTGAGCCTTTGGTGCCAGGCTAAGCTTTTAGTCCTTGGGGCTTCATTCCC
AGCAGGCAGGAATCACTGCAGGCATTCGGCCTGGGCGGCTTGAAACAGTC
CTGGCCAGCGTCCAAGGAGCTGGAGGGTGTGTGTGGGAGGGGGAGAGGCG
CACCTGTGGAATGGACCGGGGGTGGGGTCTCTTTCTGGCGTTTTTATTTT
CTGCCGGTCGTTTCCTTGGTCTTTTTTGGTGCTCTCGTTCTTCCTCTTGT
TTTTGTCCTTTTGTGCGTAGTTGTCCCCCTGTGTCCCGTCTTTTGCGGCT
TGACGGGTTTAGCCTCTTTGCCACTGTTTTTTTCACTAAGACCTTTGCTC
TCGACCCTTCGATTCACTTTGACATTTATTCTGCTATCGATTACTCGTTC
CCTCCTTTTTCTGCGCTCTTCACGTGCATAGATTCGCTTTCACCTTTCAT
ACACGACTATCTCTTTTTACCGTCCTCCTACCCCCGCCTTTTGTTTTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_m04.b1 MSMg01no166_m04.b1 CHROMAT_FILE:
MSMg01no166_m04.b1 PHD_FILE: MSMg01no166_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:21 2005
         (314 letters)



>mm_chr13_48935775_48936488
          Length = 714

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctgacagacaagtcagagtcagacccattgcacagactccatggtggtgtga 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattccctgacaggcaagtcagagtcagacccattgcacagactccatggtggtgtga 455

                                                                       
Query: 64  agacttcctggcccgtacgaatgcttcgtggctcgtgtgagtgtggtgtggccagtgtga 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 agacttcctggcccgtacgaatgcttcgtggctcctgtgagtgtggtgtggccagtgtga 395

                                                                       
Query: 124 atgctctgtggttggtgagtactctctagcttatgtaaaggctgcggcatggctgctgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atgctctgtggttggtgagtactctctagcttatgtaaaggctgcggcatggctgctgtg 335

                                                                       
Query: 184 ctcattctatggctgctgtgactcctccatacctggtatggatgctccatggctggtgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 334 ctcattctatggctgctgtgactcctccatacctggtatggatgctccaaggctggtgtg 275

                                                                       
Query: 244 gattctccatggcagtgtaaagtgcttcaaagctgttatgagtgctccatagcacctgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gattctccatggcagtgtaaagtgcttcaaagctgttatgagtgctccatagcacctgtg 215

                      
Query: 304 aatcctctatg 314
           |||||||||||
Sbjct: 214 aatcctctatg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no166_m04.g1 MSMg01no166_m04.g1 CHROMAT_FILE:
MSMg01no166_m04.g1 PHD_FILE: MSMg01no166_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:21 2005
         (351 letters)



>mm_chr13_48755423_48756173
          Length = 751

 Score =  663 bits (343), Expect = 0.0
 Identities = 349/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaacaaaggatccctgaagccatttcttcgcaatttttttttcgcctaaaaggggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaacaaaggatccctgaagccatttcttcgcaatttttttttcgcctaaaaggggttt 260

                                                                       
Query: 61  attcgcaggtttgctttagggtccctctggactttgagaagaatgtagtttgaaaaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcgcaggtttgctttagggtccctctggactttgagaagaatgtagtttgaaaaggat 320

                                                                       
Query: 121 gcgtcaggggctcgagcttaaagagggcatggggcatcggggcatagcctggctctgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgtcaggggctcgagcttaaagagggcatggggcatcggggcatagcctggctctgagc 380

                                                                       
Query: 181 ctttggtgccaggctaagcttttagtccttggggcttcattcccagcaggcaggaatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttggtgccaggctaagcttttagtccttggggcttcattcccagcaggcaggaatcac 440

                                                                       
Query: 241 tgcaggcattcggcctgggcggcttgaaacagtcctggccagcgtccaaggagctggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaggcattcggcctgggcggcttgaaacagtcctggccagcgtccaaggagctggagg 500

                                                              
Query: 301 gtgtgtgtgggagggggagaggcgcacctgtggaatggaccgggggtgggg 351
           |||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 501 gtgtgtgtgggagggggagaggcgcacctgtggaatggagtgggggtgggg 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)