BAC Information

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BAC

Clone NameMSMg01-167I04
Chromosome13 (Build37)
Map Location 52,667,384 - 52,667,873
singlet/doubletsinglet
Overlap geneLOC100040572
Upstream geneShc3, Cks2, Secisbp2, Sema4d, Gadd45g, LOC100040321, Diras2
Downstream geneSyk, Auh, Nfil3, Ror2, Sptlc1, LOC100040421, Msx2, EG432760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167I04.T7 (MSMg01no167_i04.b1)MSMg01-167I04.TJ (MSMg01no167_i04.g1)
ACCAG364964AG364965
length790719
length of high quality
(start - end)
245 (129 - 373)489 (76 - 564)
definitionCHROMAT_FILE: MSMg01no167_i04.b1 PHD_FILE: MSMg01no167_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:17 2005CHROMAT_FILE: MSMg01no167_i04.g1 PHD_FILE: MSMg01no167_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTNNNNTTTTNTTTCCCCCTACCTTTACCCACTTTATGTACA
AANNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACAGATC
CGCGGAATTCCATTCTTTACAAAATAGAATTGATTGTGCCATAACTGGAT
ACGTTGGTTAGTTTTGTCAAATTTATTTTACTTTCATTTATGTGTTTATG
CATACATCTATCATGTTTATGTGTATTTATGGAGACAGAAGAGGATGCTG
GATCCCCTGCCGTTGGAGTCAAAGGCAGTTGTGAGTTGTAGCTGACGTGA
CTGTTAGACTCTAAACTTCAGTCCTCTATAACAGCAGCAAGCACTCTTAA
ACTGCTGAGCTATCTCTCCAGCGCTTTTTTGATTAGTTTTAACTGTCAAC
TTGACACAACCTAGAATCACCTATGATTACAATCGTAATGGGGACTTATC
CGATCAAGTTGGCTTGTGGCCCCGTTTGTGGAAGGCTGTTTCAATTGTTA
CTTGACACATGAAGACCTTGCCACTATGGGTGGCACCATTCCCTAGGCAC
AGCTCCTGAACTGTGTAAGACAGGATAAAGATATCTGAGAGCTACAATAC
TACGATACATATATTTTTCTCTTTGCTCTCAGCTATGGATGTGATGTGAC
TGACTGTTTAATTCCTTCCTCATCTTTCCCTAAATGAAGCACTGTAATTT
GGAACCGCTAATCAAATAAACCCCTCCCCCCCCTGCGTGTTATTTTCGCC
CTCCTTATTATAGCCTTTATTCATTTCTCCATATTATTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTCCCGTCTGTGAAGTGGGGA
CTGTTACTGTGTCGGTCCCAGAGGAGGAGGAGCTGATGGAGACATTCTCT
GCCCTGAGGCTCACAGACAGGAAGTCATAAAATCATGATTCAAACCCAGA
TCTTCAGGTTTCTAGAGCCCCAGAGGTCAGGTCATTCTAGTATCCCTGAG
GGTGCAGAAACATGGGACAACAGTCCTGTGAAAAGCTTTGGGGCACATGC
AGATGTATTTTTAGACTAACAGTGTACCAGCTTAACACATAATTAGATTG
TCACTGTCACCTCAGAACAATATGAATAGGAAAAATCAAAAACCAAAATA
CAGCCGGGACTCCGCCCCCACACTTGCTGTTGCTACATACGCAGGCAGAG
TCTGCTGTTGCAGGGACTTGGCTAACTCGGGAAAGCCACACCCTGGTTCT
GAGGATGCTGGGCACTCGAGCTGTGACCTTCTTTGATCCAAATGCAGGAA
CTGGAAATGGTCCTTGAGGTTTCGGATGTTTAGGCGGTTGTTTTTCATAC
CTCTTTTAATCTATCCCGTTTTTTAATATTTATCCCCATACCCTTTTTTT
TTTTTATTTCCCAACTTTAACCTCAACTATTTCCCACTTTCCTTGCCCTC
CTTTACCCCCCTTTTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_i04.g1 MSMg01no167_i04.g1 CHROMAT_FILE:
MSMg01no167_i04.g1 PHD_FILE: MSMg01no167_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:17 2005
         (489 letters)



>mm_chr13_52667039_52667928
          Length = 890

 Score =  855 bits (442), Expect = 0.0
 Identities = 478/494 (96%), Gaps = 9/494 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtcccgtctgtgaagtggggactgttactgtgtcggtcccagaggaggaggagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tctggtcccgtctgtgaagtggggactgttactgtgtcggtcccagaggaggaggagctg 776

                                                                       
Query: 61  atggagacattctctgccctgaggctcacagacaggaagtcataaaatcatgattcaaac 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 775 atggagacattctctgccctgaggctcacagacaggaagtcatagaatcatgattcaaac 716

                                                                       
Query: 121 ccagatcttcaggtttctagagccccagaggtcaggtcattctagtatccctgagggtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 715 ccagatcttcaggtttctagagccccagaggtcaggtcattctagtatccctgagggtgt 656

                                                                       
Query: 181 agaaacatgggacaacagtcctgtgaaaagctttggggcacatgcagatgtatttttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agaaacatgggacaacagtcctgtgaaaagctttggggcacatgcagatgtatttttaga 596

                                                                       
Query: 241 ctaacagtgtaccagcttaacacataattagattgtcactgtcacctcagaacaatatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctaacagtgtaccagcttaacacataattagattgtcactgtcacctcagaacaatatga 536

                                                                       
Query: 301 ataggaaaaat-caaaaaccaaaatacagccgggactccg----cccccacacttgctgt 355
           | ||||||||  |||||||||||||||||| ||||||| |    |    |||||||||||
Sbjct: 535 agaggaaaaaaacaaaaaccaaaatacagcggggactctgtggtc----acacttgctgt 480

                                                                       
Query: 356 tgctacatacgcaggcagagtctgctgttgcagggacttggctaactcgggaaagccaca 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgctacatacgcaggcagagtctgctgttgcagggacttggctaactcgggaaagccaca 420

                                                                       
Query: 416 ccctggttctgaggatgctgggcactcgagctgtgaccttctttgatccaaatgcaggaa 475
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 419 ccctggttctgaggatgctgggcactcaagctgtgaccttctttgatccaaatgcaggaa 360

                         
Query: 476 ctggaaatggtcct 489
           ||||||||||||||
Sbjct: 359 ctggaaatggtcct 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 890
Length adjustment: 10
Effective length of query: 479
Effective length of database: 880
Effective search space:   421520
Effective search space used:   421520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)