BAC Information

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BAC

Clone NameMSMg01-168J08
Chromosome13 (Build37)
Map Location 13,500,311 - 13,500,583
singlet/doubletsinglet
Overlap genenone
Upstream geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneLOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168J08.T7 (MSMg01no168_j08.b1)MSMg01-168J08.TJ (MSMg01no168_j08.g1)
ACCAG365719AG365720
length726706
length of high quality
(start - end)
313 (48 - 360)277 (58 - 334)
definitionCHROMAT_FILE: MSMg01no168_j08.b1 PHD_FILE: MSMg01no168_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:55 2005CHROMAT_FILE: MSMg01no168_j08.g1 PHD_FILE: MSMg01no168_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCTTTGTACCTCATGGCTTCTGATATTACACCATCTTTTCTT
ATTTTCTATGAAATAAATTCTCCAAATAATGCATGAATCCTAGTCCTTCA
GGTCAAAGAGGCTTACACTTGATGGTTTAGGATGTACATAGTCAAGGGAT
AACTATTCAGAAATCTGCTGAGGTAATTTGGCATCTGTCTTTCTGACCAT
GAACGGTATGATCCCAATTACTGTGAGGGACTGCTATTTACTCTTGACAT
TCCTGGATGTGAGGGTCTCATTAATTTACCTTTGAAAGATGTTGTATCTC
TGACACTCTTTTATTACCGCCCCTCCCACCACTATCTGGATGTGTAAATC
ATTTTCTTGCAAGGTGAAACATTTAAAAATTCATTTCTTACCACAACCAA
GATCTCCTGACTTAAGCATGTGAAAAGCTAAAATGTGTCAGTAGATTGCT
CATCTTGCTGAAAATTATCTTACTTCTCAGCAGGAGTTTATTTTCCCCCT
TCGCAATCTCTCTGATTTTGAATAGGAGAACAGCAGGAGTGCTTACATGA
CAGACATTTCAATCACTAGATGGTACAGAGGGTTGTTCCAGGCACTCAGC
AGATCATGTGTCACTTTCAGTATGAATCCTTTGCTAAGCAACTATAATTG
AACAATCACATGGAAGTTAGATGCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCCTATTTCCACCTCTCATTTCTGCCAAAGAGCACCAGGATTT
CAGTTGCTCAGGCTATGTGCCCAGCTTTACATGAGCTCTAGGGCTTTGAA
CTCTGGTCTTTCCTGTTGCTCAGGAAGCATTTTACACCTCACGCAGCTCT
AACTTCAGCTCTTCATATTTTATGAGCACACATGGCTGGTGGACCCAGCT
CAGGTCAGAGGAATCTGGTGACCTGCCAAGGTCCCTAAGAGAGAGGATTT
ATTTGTTATACCTAAGCTTCCGAGGGGACTAAATCTCTTGGGTAGTTGAC
CTNNACTGGGCCCAAGTGGACACAAGAATGAAAAATCCCCATGACCTGCC
CAAAAAAAAAATAACATCACCGCGGAGATAGCATGACTATCCCCACTATG
AATTCCAGGTTACAGATGAGTAGCAGCACCCATGGAGCCAAGTGTATGTA
ATACCAGGCCTAAGGTTTCCTAAGCCCGCACCCTCAGAACTGCCACAGGG
GTGGGGACAGTGTGAGACTGAGGCTTTGGCATACTGAGATGCGCTGTGAA
AACTGACCAATGGCATTCCCCTCACTCCGGTGACTTCTTGAGCCCACTGG
GCGGTTGACAATCGAGATGATTGGTTTTACGCACACCTTCCACCTCCGTC
ATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_j08.g1 MSMg01no168_j08.g1 CHROMAT_FILE:
MSMg01no168_j08.g1 PHD_FILE: MSMg01no168_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:56 2005
         (277 letters)



>mm_chr13_13500111_13500787
          Length = 677

 Score =  441 bits (228), Expect = e-128
 Identities = 262/276 (94%), Gaps = 6/276 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctatttccacctctcatttctgccaaagagcaccaggatttcagttgctcaggctatg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcctgtttccacctctcatttctgccaaagagcaccaggatttcagttgctcaggctatg 414

                                                                       
Query: 61  tgcccagctttacatgagctctagggctttgaactctggtctttcctgttgctcaggaag 120
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 413 tgcccagctttacatgatctctagggatttgaactctggtctttcctgttgctcaggaag 354

                                                                       
Query: 121 cattttacacctcacgcagctctaacttcagctcttcatattttatgagcacacatggct 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 353 cattttacacctcacgcagctctaacttcagctcttcacattttatgagcacacatggct 294

                                                                       
Query: 181 ggtggacccagctcaggtcagaggaatctggtgacctgccaaggtccctaagagagag-- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 293 ggtggacccagctcaggtcagaggaatctggtgacctgccaaggtccctaagagagagga 234

                                               
Query: 239 -gatttatttgttatacctaagcttccgaggggact 273
            |||  |   |||||||||||||||| ||| |||||
Sbjct: 233 agatcaa---gttatacctaagcttctgagaggact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)