Query= MSMg01no169_i14.b1 MSMg01no169_i14.b1 CHROMAT_FILE:
MSMg01no169_i14.b1 PHD_FILE: MSMg01no169_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:15 2005
(322 letters)
>mm_chr13_40187519_40188240
Length = 722
Score = 553 bits (286), Expect = e-162
Identities = 310/318 (97%)
Strand = Plus / Plus
Query: 5 gaattcattgtttttaattgctgagtagtactccattgtgtaaatgtaccacattttctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtttttaattgctgagtagtactccattgtgtaaatgtaccacattttctt 264
Query: 65 tatctattcctctgttgagggacatctgggttctttccagtaaatgactgacatggtaat 124
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatccattcctctgttaagggacatctgggttctttccagtaaatgactgacatggtaat 324
Query: 125 tttctataactgcatacataccaccacctctaagcttttctagcagaggtcatttaaata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttctataactgcatacataccaccacctctaagcttttctagcagaggtcatttaaata 384
Query: 185 ttcaaaattcttataatataccagtggattcagggcctcaaggaaacctaaccctagcaa 244
|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 385 tttaaaattcttataatataccagtggattcagggtctcaaggaaacctaacgctagcaa 444
Query: 245 tccacagggcacaaaggctcagcctagaaaacaacagtggtagagaaggctctgttgaca 304
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 445 tccacagggcacaaaggctcagcctagaaaacaacagtggtcgagaaggctccgttgaca 504
Query: 305 acgtatctactagcatct 322
| ||||||||||||||||
Sbjct: 505 aggtatctactagcatct 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no169_i14.g1 MSMg01no169_i14.g1 CHROMAT_FILE:
MSMg01no169_i14.g1 PHD_FILE: MSMg01no169_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:15 2005
(287 letters)
>mm_chr13_40333774_40334463
Length = 690
Score = 511 bits (264), Expect = e-149
Identities = 281/288 (97%), Gaps = 3/288 (1%)
Strand = Plus / Minus
Query: 1 ctaggtatcccttccacctcacctcctctgtccctgtgcccatccttgacctgcgtgcat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctaggtatcccttccacctcacctcctctgtccctgtgcccatccttgacctgcgtgcac 429
Query: 61 gctgcaggctcatctctaggaggtcacacatggatgctcggcttccattctccgtggctt 120
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 428 gctgccggctcatctctaggaggtcacacatggatgctcggcttccgttctccgtggctt 369
Query: 121 ctttcactgctcatcactctccaacagcactgttaaaactcaagtctcataattgagcga 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ctttcgctgctcatcactctccaacagcactgttaaaactcaagtctcataattgagcga 309
Query: 181 atagact---aaaaaaaaaaagaatttaaacaacacaccactcaaattattttttaaaaa 237
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atagactaaaaaaaaaaaaaagaatttaaacaacacaccactcaaattattttttaaaaa 249
Query: 238 gcaattttctactgtagatttagaagccgacagatctattttagcccg 285
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gcaattttctactgtagatttagaagccgacagatctattttagcccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 690
Length adjustment: 9
Effective length of query: 278
Effective length of database: 681
Effective search space: 189318
Effective search space used: 189318
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
