TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTATCAATATTTAACAAACATATATTTGGTTTTAAAAACATGT
AATTTTTGTCTTCATTTTGGATCACTATGCCTGCATATCTTTACGAAAGA
CGTTTTTGGATCATAAAATATGCTCAACATTGCTTGTATATTCAAGCACA
AATCCCCAAAACAGTTATCTCAAACTTCATACCCATCAGTCTATAAGAGT
TTGTGTCAGTGCAAAATTGAATTTTTTCATAAGTTCTAATATTAATTTTA
ATTCTGTCCATCCACAAACATTTTATTTTTGTGCATTATATATTAGGAAA
AGCTGATGTTCATAATTGATATTTACTCACAAACTTTCCTAAATTCTCAT
TTTTAAAATGAATATTTTTTTCAGTAATCACATGACAAAGAATTCATTTT
AGATGCTTGTTTTAAATAAAACAAATACAATTAATTATTCCAAACATTAA
GAACTTGACCCTTCAAGTACTGTTTACTTAATCTTTACCCAGTATCTCAA
GCACTACTTTAAGTTAGAGCTAGAGCTTTCACTAAGAGAAGTCGTTTTTA
GTGTTTTACTAAAAGCCCCTAGAGCAGCACAGAAAACAATACATATTCAT
AAACAAACAAAATTAGAAGTCAGTGTTCTGAAAAAGAAGTACTTGAAAAA
CACCCTGATTTTAAGCTTTACAGAACATATCATTGTTTCAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACCTAAAGATGACCACACACAC
AATGCCCTGGACTCTGATCCTTGGCCCTTCAATCATTAAATAAGAAAGTG
TTCTTGCCTACAGGCCAGTCTTATAGAGGCATTTTCTGAGTTGTGATTTC
TTCCTTTCAGATGACTCAACTTAATGTTAAGTTGACATAAATAACTAGCA
CTTTATGTCATAATGATTCTTAACTTTGCTTTTAATTTGACCAGATATTT
TGAGCCTATATTTACATGTGAGATTAACACAGTTAATATCTGAGTAAGTC
ATACTCAATTATTTTTTTTTAACCACCCCCCCCCAAAAATTATCCAGAAA
GTATTACACTAGCAAAAATATATTTGACTAATAATATTTTTAGATTTGTT
GTTAAGCTGCTAGTGTGTGCTCTCTCCAGTTTCTTTTTGGAGGCACTCAG
AGCTATGAGTTTCCCTCTTAGAAATGCTTTCATTGTGTCCCATAAGATTG
GGTATGTTGTGGCTTCATTTTCATTAAACTTTAAAAAGTCTTTAATTTCT
TTCTTTATTCCTTCCTTGACCAAGGTATCGTTGAGGAGACTGTTGTTCAG
TTTCCACGTGAATGTTGGCTTTCCATTATTTATGTTGTTATTGAAGATCA
GCCTTAGTCCATGGTGTTCTG

Query= MSMg01no170_d20.b1 MSMg01no170_d20.b1 CHROMAT_FILE:
MSMg01no170_d20.b1 PHD_FILE: MSMg01no170_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:08 2005
         (320 letters)



>mm_chr13_79689120_79689839
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactatcaatatttaacaaacatatatttggttttaaaaacatgtaatttttgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactatcaatatttaacaaacatatatttggttttaaaaacatgtaatttttgt 264

                                                                       
Query: 65  cttcattttggatcactatgcctgcatatctttacgaaagacgtttttggatcataaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcattttggatcactatgcctgcatatctttacgaaagacgtttttggatcataaaat 324

                                                                       
Query: 125 atgctcaacattgcttgtatattcaagcacaaatccccaaaacagttatctcaaacttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgctcaacattgcttgtatattcaagcacaaatccccaaaacagttatctcaaacttca 384

                                                                       
Query: 185 tacccatcagtctataagagtttgtgtcagtgcaaaattgaattttttcataagttctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacccatcagtctataagagtttgtgtcagtgcaaaattgaattttttcataagttctaa 444

                                                                       
Query: 245 tattaattttaattctgtccatccacaaacattttatttttgtgcattatatattaggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattaattttaattctgtccatccacaaacattttatttttgtgcattatatattaggaa 504

                           
Query: 305 aagctgatgttcataa 320
           ||||||||||||||||
Sbjct: 505 aagctgatgttcataa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no170_d20.g1 MSMg01no170_d20.g1 CHROMAT_FILE:
MSMg01no170_d20.g1 PHD_FILE: MSMg01no170_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:08 2005
         (292 letters)



>mm_chr13_79842451_79843142
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacctaaagatgaccacacacacaatgccctggactctgatccttggcccttcaatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 caacctaaagatgaccacacacacaatgccctggactctgatccttggcccttcaatcat 604

                                                                       
Query: 61  taaataagaaagtgttcttgcctacaggccagtcttatagaggcattttctgagttgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 taaataagaaagtgttcttgcctacaggccagtcttatagaggcattttctgagttgtga 544

                                                                       
Query: 121 tttcttcctttcagatgactcaacttaatgttaagttgacataaataactagcactttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tttcttcctttcagatgactcaacttaatgttaagttgacataaataactagcactttat 484

                                                                       
Query: 181 gtcataatgattcttaactttgcttttaatttgaccagatattttgagcctatatttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 483 gtcataatgattcttaactttgcttttaatttgaccagatattttgagcctgtatttaca 424

                                                           
Query: 241 tgtgagattaacacagttaatatctgagtaagtcatactcaattattt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtgagattaacacagttaatatctgagtaagtcatactcaattattt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)