BAC Information

Click to search

BAC

Clone NameMSMg01-171A13
Chromosome13 (Build37)
Map Location 39,919,660 - 39,919,965
singlet/doubletsinglet
Overlap geneA230103O09Rik
Upstream geneSlc35b3, EG666867, LOC100041779, LOC382747
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171A13.T7 (MSMg01no171_a13.b1)MSMg01-171A13.TJ (MSMg01no171_a13.g1)
ACCAG367407AG367408
length726764
length of high quality
(start - end)
318 (46 - 363)97 (85 - 181)
definitionCHROMAT_FILE: MSMg01no171_a13.b1 PHD_FILE: MSMg01no171_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:09 2005CHROMAT_FILE: MSMg01no171_a13.g1 PHD_FILE: MSMg01no171_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCCAAGATGCGCATCTACCAGCGTCGTCTCCCCTCCTCCCTC
TACTTCCTCCCAGGCACGCCAGCTGCGGGGCTTTCAAACCGCGCCCCTCT
TCCTGCTTGAGGAGCTCAAGGTGAGCCTTGGGCCTGATGGCTGCACGGAA
AACCTCTCTACATGTCAGCAGAGCTCAAAGCCAAGAGGTGGGACGCTTGC
CAGGGAACACAGGGGCCGTGCTGCTGTTTGTGCAGGCTTTGTAGTCAAGC
AAGGAGACCCGACAAGTATGCAGGCATCTCCCGGAAAGGGAGCTCAGCAC
ATCTGGGCGGTTGTTATCTCGGACCCGCCCCGCCGTTGTGTTCAGGATAA
GATTTAACTACAGATCTGGAGTTGCTGACCAGAGATCTGACCTTGGAGTA
GAGACAATGAACTGTGATTTAAGAAAACAAAAACCGGAAAAACAATAAAA
CCAATGGAAGTGAACGTGACTTGCCCTGACATAGAAAGACACATTATTGA
AGTGTTGTTCTTGGACACGCAGTAAATGAGCTTCCAATTTGCTAATGATT
ACAAGATATGTATCTAGGAATATTACCAATTAGATGAATTTCTCATGGAC
AATTCTACGGAATAAAGGAGCAAAATGCTAACGTTCGATGTGGGACTCAG
AGTTAGCAATGCTAATATAGGATTTT
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCATCCTGGAAATTTT
ATTTTTAATTAATTAATTATTACCTAATTAATTATTAATTGAGTGTGTGC
ATATGCTGTATGGTGATATATGGGGGTTGACXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCCACAACCCCCCCTTATTTTCTTACATCATCCAGCCCCGACACCCGCCC
ATTTTTGGTGATTCCCAANGCAAAGACCCCNGGANAAGGGAAAAAGAGNG
AGAGAAGAGGTCCCCCCCAAAAAAAAAAAAAAACATGTGGCGCGGGGGGC
CACCCCCCCCCCCCACCCCGCTCCATACCCCTTCTCCCCCCCTGCCCCCC
CCACCCCCCTCCCCCCCCCGCCATTTCCCCCACCCACCCTCACCCCCCCT
CCTCACCCCCCTTTTTCCCCCAAGACCCCCCCCCCCCCCCCGAATACCCC
CACCCCCCCTCCCCCCCCTCCTAACACCCTCCCCCCCCCTCCCCCCCCTC
CCCCGTATCCCCTCCTCCCCTTTCCCCTCCCCCCCACCCTTTTACCCCCT
CTCCCCCCCCCCCCACCACCCCCCCCCCTCTCCACACCTCCATTCTTTCC
GCCCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_a13.b1 MSMg01no171_a13.b1 CHROMAT_FILE:
MSMg01no171_a13.b1 PHD_FILE: MSMg01no171_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:09 2005
         (318 letters)



>mm_chr13_39919452_39920168
          Length = 717

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%), Gaps = 1/307 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   tccaggccaagatgcgcatctaccagcgtcgtctcccctcctccctctacttcctcccag 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tccaggccaagatgcgcatctaccagcgtcgtctcccctcctccctctacttcctcccag 268

                                                                       
Query: 69  gcacgccagctgcggggctttcaaaccgcgcccctcttcctgcttgaggagctcaaggtg 128
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 269 gcacgccagctgcggggctttcaaaccgcgccc-tcttcctgcttgaggagctcaaggtg 327

                                                                       
Query: 129 agccttgggcctgatggctgcacggaaaacctctctacatgtcagcagagctcaaagcca 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agccttgggcctgatggctgcacggaaaacctctctacatgtcagcagagctcaaagcca 387

                                                                       
Query: 189 agaggtgggacgcttgccagggaacacaggggccgtgctgctgtttgtgcaggctttgta 248
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 388 agaggtgggacgcttgccagggaacacaggggccatgctgctgtttgtgcaggctttgta 447

                                                                       
Query: 249 gtcaagcaaggagacccgacaagtatgcaggcatctcccggaaagggagctcagcacatc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtcaagcaaggagacccgacaagtatgcaggcatctcccggaaagggagctcagcacatc 507

                  
Query: 309 tgggcgg 315
           |||||||
Sbjct: 508 tgggcgg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space:   218772
Effective search space used:   218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)