BAC Information

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BAC

Clone NameMSMg01-172E23
Chromosome13 (Build37)
Map Location 109,436,599 - 109,501,159
singlet/doubletdoublet
Overlap genePde4d, EG668144
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
Downstream geneLOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172E23.T7 (MSMg01no172_e23.b1)MSMg01-172E23.TJ (MSMg01no172_e23.g1)
ACCAG368264AG368265
length719723
length of high quality
(start - end)		313 (48 - 360)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no172_e23.b1 PHD_FILE: MSMg01no172_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:45 2005CHROMAT_FILE: MSMg01no172_e23.g1 PHD_FILE: MSMg01no172_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,500,853 - 109,501,159)(109,436,599 - 109,436,885)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTACTTAACACTGACTCACTCCTTTGTCAGATGTACTTTGCA
AATCTTGCAACTCCCTCTGTTGCTTGCTTACTCATTAGTTTAGTCATGCC
TATTAATGAGCAATCTAATTTCTTAGCCTATATAATTATTTTCAATATCC
TGTTCAAAACATCTTGGCCTATCACTAATTTAAATGAGTGTGTGTTCCAC
ATTTTCTTCAAGTCATATTTTAATTTTTAATTGAGCTTCTAGTGTGAATT
AATTTTCCCTTGTGATATGTTCTTGGAGGTGAAGATTCAATTTTTCCATA
TGTATATTTACTTANTTTACCATCCTGTACCACCTCAGTTTTCCATTANT
TNATTTGATTACTTTGCCATCTTAAAAAATTAAATTACTATGTAATGTGT
ATATATTTCTGGACTCTGTTTCCTTTACCCATTTGTCTATTCATATGCCA
AAAATTACCTGCCAGTCTTTCCCCAGATGTTATAAGCAAAAATCCTCTCT
AGACACCGCCTAATGTTCATATGGTCAAAACTGTCCCCATTTGAGAAGCA
CTAAGTTAAATTGACCTTGGCCAGGCATAGACACAAAAAATTCTAACTTC
ACTAGAGAGAGAGATGTTTTACGCGCCGTGGTTCCTTCGAACACCCCCTG
CTCCCTTTCTTGCCTCTCT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAAAT
AGGGTTATTTGGTTTTCTCCAATCTAACTTTTTGAGTTCTTCATATATAT
TGGATATTAACCCTCTATTGGATTTAGGATTGGTAAAGATCTTTTCCCAA
TCTGTTGGTTGCCTTTTTTGTCTTATTGACCATGACCAGTGGCCATTTCT
AACACAGATTCTGTTCATGTCTGGTCTGATTTTTCTTCTCTTCCCTGTTG
GCTTTTCAAATTCACTTCCTTTACTCCTAGTCTTACATGATCTTTGTCCC
ATCCTGTTTCTGNTCTCGAGTCGGANCCTGTTTCCCAGGGTCTCATGGTT
GAGCAGGTAATCTCACCCTCAAAAAATAAAGGCTTTTGTTTGTATCTCTA
GCAGCAAATGTAAGCAGTAGCTTGATCTAGGTTACAGTGTGATTTGCACT
GCTTGCTTCAGGCTAGGCTTCTCTCTGCAACTCTGTTCTGTCTTGCCCAG
CTATGTCCTGCTCGCCTCCTGCTGGGCTCTCTGGTCAGCTGACCCTCTGT
TCTGTCTCTGTATTCTGTTCTCTGACATACAAGGCGCTGGGAATCCTAGG
TGTTTAGTCACCCGCTCATTTTCCTGTGGGTTCTGAACTAATGCGGAAGT
CAGAAGAGCATCGTGTGCTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_e23.b1 MSMg01no172_e23.b1 CHROMAT_FILE:
MSMg01no172_e23.b1 PHD_FILE: MSMg01no172_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:45 2005
         (313 letters)



>mm_chr13_109500649_109501361
          Length = 713

 Score =  571 bits (295), Expect = e-167
 Identities = 304/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttacttaacactgactcactcctttgtcagatgtactttgcaaatcttgcaac 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattctttacttaaaactgactcactcctttgtcagatgtactttgcaaatcttgcaac 452

                                                                       
Query: 65  tccctctgttgcttgcttactcattagtttagtcatgcctattaatgagcaatctaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tccctctgttgcttgcttactcattagtttagtcatgcctattaatgagcaatctaattt 392

                                                                       
Query: 125 cttagcctatataattattttcaatatcctgttcaaaacatcttggcctatcactaattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cttagcctatataattattttcaatatcctgttcaaaacatcttggcctatcactaattt 332

                                                                       
Query: 185 aaatgagtgtgtgttccacattttcttcaagtcatattttaatttttaattgagcttcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaatgagtgtgtgttccacattttcttcaagtcatattttaatttttaattgagcttcta 272

                                                                       
Query: 245 gtgtgaattaattttcccttgtgatatgttcttggaggtgaagattcaatttttccatat 304
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 271 gtgtgaattaattttcccttgtgatatgaacttggaggtgaagattcaatttttccatat 212

                  
Query: 305 gtatatt 311
           |||||||
Sbjct: 211 gtatatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no172_e23.g1 MSMg01no172_e23.g1 CHROMAT_FILE:
MSMg01no172_e23.g1 PHD_FILE: MSMg01no172_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:45 2005
         (287 letters)



>mm_chr13_109436400_109437086
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgtaccccatttttaaatagggttatttggttttctccaatctaactt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 200 tttgtttagctctgtgccccatttttaaatagggttatttggttttctggaatctaactt 259

                                                                       
Query: 61  tttgagttcttcatatatattggatattaaccctctattggatttaggattggtaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttgagttcttcatatatattggatattaaccctctattggatttaggattggtaaagat 319

                                                                       
Query: 121 c-ttttcccaatctgttggttgccttttttgtcttattgaccatgaccagtggccatttc 179
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttttcccaatctgttagttgccttttttgtcttattgaccatgaccagtggccatttc 379

                                                                       
Query: 180 taacacagattctgttcatgtctggtctgatttttcttctcttccctgttggcttttcaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 taacacagattctgttcatgtctggtctgatttttcttctcttccctgttggctttttaa 439

                                                          
Query: 240 attcacttcctttactcctagtcttacatgatctttgtcccatcctg 286
           |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attcactttctttactcctagtcttacatgatctttgtcccatcctg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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