BAC Information

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BAC

Clone NameMSMg01-172G11
Chromosome13 (Build37)
Map Location 97,300,517 - 97,300,789
singlet/doubletsinglet
Overlap genePolk
Upstream geneF2rl1, F2r, Iqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik
Downstream geneCol4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172G11.T7 (MSMg01no172_g11.b1)MSMg01-172G11.TJ (MSMg01no172_g11.g1)
ACCAG368326AG368327
length743704
length of high quality
(start - end)
258 (45 - 302)274 (431 - 704)
definitionCHROMAT_FILE: MSMg01no172_g11.b1 PHD_FILE: MSMg01no172_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:52 2005CHROMAT_FILE: MSMg01no172_g11.g1 PHD_FILE: MSMg01no172_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATTCAGTTTCCACTTACATGGCAGCTAACAACCATCTTACGTAA
CTCCAGTTCCAGAGGATCCCCCACCCTCTTCTTGCTATTCCTTGGGCACT
GTTCTGTACATGTAGTGCACAGCAGCAGCAGCAGCACACACACACACACA
CACACACACACACACATACACACACAGAAACAGAGAGCGCACAAAAACAA
AAGGAGTTATGTACCAATTGCTCTCTTTACGACATTTCCACATAAAACAG
TAAGACAAGTCATATACTATTACGGAAGTGCTATGGGCGTTCAGAAGAGA
GATATGTATATTGTTTGACCANACCCAGCCCACGAGGTGGTATATGAATG
ATACTTGAGGTACAACCACAATAACAAAATAAAAAAGTGGGTAGGGAGAT
CCGGGCTAAACTAAAACCATGACCAGGGGTGCCAAAAGCGACTCAGTAAC
ATCGAAGGTCAAGTTATTCTAGGCTAACCCTGCCATACACCTGTGTAACC
GAAATGGTGCTTGCCCACACAGAACAATGCCCCACCCAACACCTTATCCC
CTTCTTACCCCCATTATTTTTTTTCTTTCTCCCCCCCCCATAACTCCGAT
ATTACCTCCCCTTTACATACATCTCCCTCCTCCTTTTCCACTCACCCTCC
ATATCCCCCCCCCCCCCTTCCTCTCCTTTTTTATATACTCCTG
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTCCTGTGGTTTGGGA
CAGTGGTTAAAGAGAACATTTTCTCCGGAAATCTTCAAATTCTTCCCAGG
CTGATTCTATTGCTGACTCGTCAGATTACCACTTAAAAACACAAAGCAAA
CCCTGTGTGTTTGGTGGTAATGAAGGATGGAAACTTGCAATGTTTCAAAA
GGAATTCTAAGGGAGAGGTTTCAGGATGGGGGCTTCTTCTAAAATGTACT
CAAAAGCATGCCAACAACATCATGAGTACGTGGCATATTGACCAAAGTAG
TCTGAATGAATTTTTTTGCAACCCCGACCCACCCTAACCCTAGGGAGCAG
ACAGTGGGAAGGGACAAAGGGGAAGAAACATGAAAGGGACACCGAACTAA
GCAAGCTCCTGTGTGGAGCACGTTTTCATTTCTAATATATTGTGAAGAGT
CAAGCCCCATACGGAGAAAACCTAAACATATATTAGACTAGTATTTTTTA
CAACTCCCAGATGTTCAAGTATTTATGTTTTCATCAACAGATTAGATACC
TTGTGTGGTATTGTAAACTGCAATTATTCTTTTACCATCCAATTTAAAAC
ACAATGAATTGAGATTACTCTAAATTTAAGTCTTCACATGAATAATCAAA
TAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_g11.g1 MSMg01no172_g11.g1 CHROMAT_FILE:
MSMg01no172_g11.g1 PHD_FILE: MSMg01no172_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:52 2005
         (274 letters)



>mm_chr13_97300317_97300990
          Length = 674

 Score =  497 bits (257), Expect = e-145
 Identities = 269/273 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaagggacaccgaactaagcaagctcctgtgtggagcacgttttcatttctaatatat 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaaagggacaccgagctaagcaagctcctgtgtggagcacgttttcatttctaatatat 260

                                                                       
Query: 61  tgtgaagagtcaagccccatacggagaaaacctaaacatatattagactagtatttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaagagtcaagccccatacggagaaaacctaaacatatattagactagtatttttta 320

                                                                       
Query: 121 caactcccagatgttcaagtatttatgttttcatcaacagattagataccttgtgtggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 caactcccagatgttcaagtatttatgttttcatcaacagattagataccttgtgcggta 380

                                                                       
Query: 181 ttgtaaactgcaattattcttttaccatccaatttaaaacacaatgaattgagattactc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtaaactgcaattattcttttaccaaccaatttaaaacacaatgaattgagattactc 440

                                            
Query: 241 taaatttaagtcttcacatgaataatcaaataa 273
           |||||||||||||||| ||||||||||||||||
Sbjct: 441 taaatttaagtcttcaaatgaataatcaaataa 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)