BAC Information

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BAC

Clone NameMSMg01-172N12
Chromosome13 (Build37)
Map Location 4,358,258 - 4,358,543
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12
Downstream geneAkr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172N12.T7 (MSMg01no172_n12.b1)MSMg01-172N12.TJ (MSMg01no172_n12.g1)
ACCAG368630AG368631
length735740
length of high quality
(start - end)
235 (123 - 357)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no172_n12.b1 PHD_FILE: MSMg01no172_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:24 2005CHROMAT_FILE: MSMg01no172_n12.g1 PHD_FILE: MSMg01no172_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAA
TTCAGCAAATATCTACTAGGACAGAAAGGACAGTCTTATCCAAATAAGGG
TTTACCATGAGAAAAGTTACCCATTCCCACTGAGACAGGTTTCTTCATTG
GACCCTAAGAATTCAGGCAGAATTATAGAGCATAAATAAATTTTTTGCCT
AAGTCCAGTTTTGTTTAATATTATTTAAAGGGGGGAAATGTTACCTCCTT
CCAGTCTAGCAAGGCTGGCTGTGGTCATCTGCTGCTTAAGGGGCACCACC
TGCTGTGCTGCTCCTTTGATGTGCCACTACCTGCCCGAGGCCCAACCTGC
CTGAGGTCTCTGTTCCAAGACTTTCTGGAGTTAGCACCAAACTGTGATTT
ACTATAAGGCTGACCCCATTGACTTCAAAGGAACTTTGCTTGTCCAGTGA
TGGGCCTCCCCTTTTCTTTATATTGCGCGTTTGCTGATATCAATATGGAT
CCTTGATCAGAGACTTGTCTTGGTTCCACCCTTATCCCGTGCCGTCTATC
CCCTCCTCCCTTCCAGTCTTTCTAAATGTCTTTCCAGTCCCAAATCCATC
ATTGTGATCTTAATGCCCGTTCCACCTTTTCTCCCCTTTTTCACTTTTCA
TTTCCCTCCTTTCCTACTTTTTTCCTAATCCTATTTCTATTTTTAAATCT
CCTCTCTCCCCTATTTTTTTTTCCTATTTCCCCCT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGTGGTAAAGTTTTTCCTCTGAGATGAAGT
GACCAAAGTGAAGGATTTACTAGATTGGGAAGAAGTTTATTCAGGTTTTC
TCCCCAGAACAATTAGTTGTGTGATAGGGTGATGGAGTCAATATTTAGCT
ACTGATGATGAAGTTGATTTCTAACATGGTCTTCAATGGCTGAGCCAAAC
CTTCCACTTGAAATTTTCAGTTGCTGACATCTGGTTTGTCTCTTCTTTGT
GACTAGCTACTTTTCTTTTCTTGCCCAGGCTCCAGGTTCCTTGAGTTGGC
ATTGTTTTTTTTATCCCATTCTATGCCGTCAAACAACAGACTCACTTATG
GTGATGGTACCTGCCCCAAAACATAACATCACAGGAGTCTTACCAGAATG
CACAGCTGGATTCGAGGCTATCAGGAAGGTGGGCTTACCACTTAGCAGGA
CTTCATTCTATTTTTTCTGACTATCAGTATTTCCTTTTTTTATTAAACTA
AATAATATATATATTTTAATATTTACATTTTAGTTTTGTCTTTTTATAGT
TTTAGCCAATATTTAGATTACTTAATTTCTCCTTAATCGCTATTGATTTA
TTTCTGTATCTTTTATTCAATTTGTTTTTCAGCTTTTTTTTAATACTATT
TTGGTTCTTTCTACTCTGGTACTATAGTATGCCTACACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_n12.g1 MSMg01no172_n12.g1 CHROMAT_FILE:
MSMg01no172_n12.g1 PHD_FILE: MSMg01no172_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:24 2005
         (286 letters)



>mm_chr13_4358058_4358743
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtggtaaagtttttcctctgagatgaagtgaccaaagtgaaggatttactagattggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aagtggtaaagtttttcctctgagatgaagtgaccaaagtgaaggatttactagattggg 427

                                                                       
Query: 61  aagaagtttattcaggttttctccccagaacaattagttgtgtgatagggtgatggagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aagaagtttattcaggttttctccccagaacaattagttgtgtgatagggtgatggagtc 367

                                                                       
Query: 121 aatatttagctactgatgatgaagttgatttctaacatggtcttcaatggctgagccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aatatttagctactgatgatgaagttgatttctaacatggtcttcaatggctgagccaaa 307

                                                                       
Query: 181 ccttccacttgaaattttcagttgctgacatctggtttgtctcttctttgtgactagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccttccacttgaaattttcagttgctgacatctggtttgtctcttctttgtgactagcta 247

                                                         
Query: 241 cttttcttttcttgcccaggctccaggttccttgagttggcattgt 286
           |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cttttcctttcttgcccaggctccaggttccttgagttggcattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)