BAC Information

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BAC

Clone NameMSMg01-173B16
Chromosome13 (Build37)
Map Location 83,164,030 - 83,164,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B16.T7 (MSMg01no173_b16.b1)MSMg01-173B16.TJ (MSMg01no173_b16.g1)
ACCAG368813AG368814
length725714
length of high quality
(start - end)
311 (45 - 355)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no173_b16.b1 PHD_FILE: MSMg01no173_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:42 2005CHROMAT_FILE: MSMg01no173_b16.g1 PHD_FILE: MSMg01no173_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGGTCACTATTCATTGCCAACTCTTAGAAGAAAGTAAGGGGATC
GCATTCACTATGATTCCAAATTACTACCAATTCTGAACGTTTTATGGTGA
AGAAACTTCCACTTCCTGTTGACAAAACTAGGAAGTTAACAAAGTTTTGG
CAATTCAAAATGAGTTTGTCTATAGCCAAATTATAAACACTATAGTTCTT
TGGGAGGGTTAGAACATATTCAAATGCTTGCCCCACCCCCGTAAGATACC
TTTTGAATTACAAAGACTAGGAATACTTTTATTCATAAATAAGAAATGTA
CTTCTTTTTTTAAATACCCCCCCCACCGAGTAGAGGGGCAAAATACAATA
AGCAGAGACACAGAATAAGAAGCAGCAGAAACATATGAATTTTCAGAATA
GCTTAGTTCAAAGCAAAGAACAAATGAAAAGATGCTGAGCAGACATAATA
CCCCAGAAATCTGTTTTCAAATAGATGATAGAGCAGCAGCAAAACCACTC
CCTGAAAAAAAATTCAAGTTTGTTACACTAATGTCTTTCTTTCTATGCAA
CCCATGTCTGAAAAGCCTCCCAGCAACGACCTGCCATGGTGAGTCACCGT
GGCTCACATACTGAGCCTAACTCCCAGTGACTAAATAAGAGCTCATAGTT
AATGATCTCCATCCCTCACTTATAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAATGATATTTTTTAACATTAGTT
AACCAGTGCCTGATTCAGTCAACATAAGCAAAGCTTACGATTGAAGTACA
TGAGAACCAACAGAGAAATCCACATCTAACAACATGCACAGACAGAGGAT
TTGAAACACACAGTCCTAAATAGAATGTCTCCATCAAACTCCTCCCTGGG
ATGAGGGAGTCACGTGCGAGAGAGCAGAGGGAAAACAGATCTTACAATGG
AGTCTCACTGGGTTTATTAACCACAGGTAAGAATAGGCTCCATGCCCAGA
AATAGTTCTATTTTCACACCACCCACACAATAGCATTGTTTTTCTCATAT
AGTTTGTATGAACAATTTTTATCTTACTGGTCATTTTGGTGTGTATTGTA
GGTTACAACTGTGTATTTTTAAAATTTGTATGTATTTGTGTCAGGGATAG
GGTATATATATCTTGTTGGTATGTATCTGTTTCTTTTGCTTTTTTCTTTT
AAATTGTTGTTTGATTGTTGTTGTTAGTTTGTTTGCCTCCTTTTTTATAA
AAGAGAGAGAGAATGACAGATAACGGAAAGGCATGCACTTGGTTGAAGGT
AGTGTGAACACCACCTGTTAACTTCTCCACCCCCCCTAATCAACATTATA
TTCACCCCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b16.b1 MSMg01no173_b16.b1 CHROMAT_FILE:
MSMg01no173_b16.b1 PHD_FILE: MSMg01no173_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:42 2005
         (311 letters)



>mm_chr13_83163826_83164538
          Length = 713

 Score =  549 bits (284), Expect = e-161
 Identities = 302/308 (98%), Gaps = 2/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctggtcactattcattgccaactcttagaagaaagtaaggggatcgcattcac 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 512 gaattctctggtcactattcattgccaactcttagaagaaagtaaggggatcacattcac 453

                                                                       
Query: 65  tatgattccaaattactaccaattctgaacgttttatggtgaagaaacttccacttcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tatgattccaaattactaccaattctgaacgttttatggtgaagaaacttccacttcctg 393

                                                                       
Query: 125 ttgacaaaactaggaagttaacaaagttttggcaattcaaaatgagtttgtctatagcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgacaaaactaggaagttaacaaagttttggcaattcaaaatgagtttgtctatagcca 333

                                                                       
Query: 185 aattataaacactatagttctttgggagggttagaacata-ttcaaatgcttgcccca-c 242
           |||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 332 aattataaccattatagttctttgggagggttagaacatacttcaaatgcttgccccacc 273

                                                                       
Query: 243 ccccgtaagataccttttgaattacaaagactaggaatacttttattcataaataagaaa 302
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccccgtaagatacattttgaattacaaagactaggaatacttttattcataaataagaaa 213

                   
Query: 303 tgtacttc 310
           ||||||||
Sbjct: 212 tgtacttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 713
Length adjustment: 9
Effective length of query: 302
Effective length of database: 704
Effective search space:   212608
Effective search space used:   212608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)