BAC Information

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BAC

Clone NameMSMg01-173B23
Chromosome13 (Build37)
Map Location 50,100,142 - 50,100,458
singlet/doubletsinglet
Overlap geneLOC625110
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099
Downstream geneLOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B23.T7 (MSMg01no173_b23.b1)MSMg01-173B23.TJ (MSMg01no173_b23.g1)
ACCAG368826AG368827
length714748
length of high quality
(start - end)
320 (46 - 365)291 (75 - 365)
definitionCHROMAT_FILE: MSMg01no173_b23.b1 PHD_FILE: MSMg01no173_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:44 2005CHROMAT_FILE: MSMg01no173_b23.g1 PHD_FILE: MSMg01no173_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCCTGGTTTGCAGATCCATCTCTTGTATTTGTACACCAATCTG
TTAGAGAGAAATAAAGGGAAAGGTACATACACACACCACACACAATACAC
ATACATAAATACACATATCTCACAAATATACACTACACATAGATGACAGA
GCACATAGAGGTTCTTCTCTATTTCTATGTACAAGGGATTCACTGCAATG
CTTATGACCCAGTTACGTCCCAAAGCCCATATCACACCAGGGAATGGAGT
TTCAGTGTGAAGTGGGCTGGAACAGGGATAGCACATTTCCATCCCAATAG
CAGATCTTATAGGAAATTTGTACACACCCCCGCTCTGAGAAAGTAAGCAA
AGTAGCTGGATAGCTGTTCAATATGCAGCAGTCAGATGTTTTTCTATATA
GCAGAGAGAACTCTATGTTAATGTCATTTGACTGGGTGTAATAGTACATT
TATTTTTGCTTTCCAAAGCATTGTTTGTTTTGTTTTGTTTGTAAGTTTTT
CATAGAATACTTTATTCATATTCTTTCACTTCCTCCTCATTTTCCCAGAA
TTCTCCCTCACTACATATTTACTTATATATATTTACCTTACAGAACACAA
AACCAATCCACATAAATTATAGTGGTCTAGTGGCCATAATTGTAAAACAT
GACTTGCATTTAAA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGGATATTTCAGAGAATACATAAA
TGCTAGTTCCCTGGAAGATTGGCCCGTTGTCCTTTGATCTTGGTTTTTAT
CGCTTGCTGTGTTTGAGCTTTGATCAGTAGTTATGTGCATAGAAGACAGA
AAAAAACAAAATAAGATATATTGACAGAGAAGATGAAATATCCCCAAGGC
ACTCAACACCCCCCCAATCAGCAGACAGTACACTTATAATAACGACTCTC
CATTTCCCATGTATGCTTTTCTCCCCACTCATAACAACAGTTAGGGGATA
GAATGAGTGGACTTTTTTGTTACAGACCCCTGCAAGAAAGACGAACATAT
AAAGTAGCTTAGGTCTAGCTACAGACAGTAAGAGGAAATCTCTAGAAAGA
GTCTGGAGGGGTTGACAGGCAGGGCAGAGGGGAGAGTGGTCCTGAGGTGT
CTACATGAAGCTCACAGACCATCAGTCCATGATGGCAGAGAGGCCAGTAA
GGATCAGTGAGGCTCCATGGACATACATTTCTGAGTTGGTGGGGACACAG
GAGAAGCTCAGAGGAGATCATCTGTCCTCTGTTCAGGTGCTTGCTTTTGT
CTGTGCTGAGCTGATATGAAAAAGGTGATGAGAACTTGAGCCTCACATCA
GGGCCTGAGACTCCTCTGCTCTGAGGAAGCAGGTATCACCTGACAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b23.b1 MSMg01no173_b23.b1 CHROMAT_FILE:
MSMg01no173_b23.b1 PHD_FILE: MSMg01no173_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:44 2005
         (320 letters)



>mm_chr13_50099939_50100658
          Length = 720

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%), Gaps = 2/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttcctggtttgcagatccatctcttgtatttgtacaccaatctgttagagag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttcctggtttgcagatccatctcttgtatttgtacaccaatctgttagagag 263

                                                                       
Query: 64  aaataaagggaaaggtacatacacacaccacacacaatacacatacataaatacacatat 123
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 aaataaagggaaaggtacatacacacaccacactcaatacacatacataaatacacatat 323

                                                                       
Query: 124 ctcacaaatatacactacacatagatgacagagcacatagaggttcttctctatttctat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcacaaatatacactacacatagatgacagagcacatagaggttcttctctatttctat 383

                                                                       
Query: 184 gtacaagggattcactgcaatgcttatgacccagttacgtcccaaagcccatatcacacc 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 384 gtacaagggattcactgcaatgcttatgacccagttacgtcccaaagcccatatcacagc 443

                                                                       
Query: 244 agggaatg-gagtttcagtgtgaagtgggctggaacagggatagcacatttccatcccaa 302
           |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 agggaatgtg-gtttcagtgtgaagtgggctggaacagggatagcacatgtccatcccaa 502

                             
Query: 303 tagcagatcttataggaa 320
           ||||||||||||||||||
Sbjct: 503 tagcagatcttataggaa 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)