BAC Information

Click to search

BAC

Clone NameMSMg01-173J13
Chromosome13 (Build37)
Map Location 116,199,828 - 116,200,113
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173J13.T7 (MSMg01no173_j13.b1)MSMg01-173J13.TJ (MSMg01no173_j13.g1)
ACCAG369160AG369161
length819709
length of high quality
(start - end)
121 (46 - 166)287 (377 - 663)
definitionCHROMAT_FILE: MSMg01no173_j13.b1 PHD_FILE: MSMg01no173_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:18 2005CHROMAT_FILE: MSMg01no173_j13.g1 PHD_FILE: MSMg01no173_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAACTGCTGTTATTTAGCCAAGTAAGACACTGTGTAATGTCTGT
GATTAAGATTTGGGATATGTTTTTATTTTCATTTATGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGCGTGCCACCNACCAAAACACTCTCCCCTCCACACA
CACACTCCCCACCTCATTCCTTAAATCATCCCAATCCCCACATACCCCCC
ACCCCCACCTAACACAACTCTACTACACATCAAAACTCATAAACAAACCC
CCCCACCAAAAATTTTTTTTTTACACAACACACCAACACAAAAACAAAAT
TTTTAGATACCCCCAAAAACAAAACCCCTGAAAATAAAAAAAATTTATAT
CCTCTCCTTCCCCCCCCTAAAAAAAAAAAAAAAAAAAATATTCCGGTCCG
CGCCGCCCCCCCAATCACCACCAACTCCCCAATCACAACCCCCATACATA
AATCCATCATCCCAACCATTCTACCTATACTCTCTACCACACCAACCACC
TACACCCTTACATCATTCCCCAACCACCAATCTATCTATAATATACACAC
TCCCCCCCCCCCCACCATATTAATCACTTTAACACCTATCTTCACTAATC
TACACCACACACAAACAAACCAATAAACATAACCCCCCAACCCTCCCTAT
TCTCCCCCCCCACACCCCCCCACTTATCACACTCACCCACCCCTCTATAC
CCCCCCCCATCCCCTATCACTACACCCCCCAATTCCCAATAAAACCCAAC
CCCCCCCACACAATCCTAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTAATTCTATGATTTGGTTCC
TTTGGGGTACCAAAGGTTTGTCTGCCCAGAGCTGTGGAAGTCCCTTCTGA
ATGGGCAAATACAATTATCTAGCCTGAATGCATTTGGCTGCTGCAGTTTT
GGGTTCACTGGTTCCTGGTCCCCACACTGTTGCAACCCCCATGCCAGGTC
TTTGTCTTGCTAAGCTCATCACAGAGAACTGCCCCAGATAACAACAATTT
AAAAATGCTTGGCTGAACTTGTTCAGCAAACTGGGGTCTCTATCAAATTC
TTATTTATTATGTGTGTGCCCAACTGCAACATTTATTTATCTCAGATTGA
TAAGCAAGCTTTGGCTTGTTTTCATCAGCTCCAAATCAGCTTTGACATAG
AAATGTTGACACTACAACCTGGGCTCAAATTTGATCACATGCTTTTACAG
AATGGGTGACCAGTAGTATAGGATTCCTCTAAACTGACAGTTCTTGAATG
TACTCTATGGCTTTAAATATAATAGCATTTGAAAGGCTTGCTCTACACTA
AGAGGGTTTGTAGCATTCTTGAACAAATGTGGTTTTAAGTACTGTTCTGT
GTTATTCCCAGAAAGGTAAAACAGAAAAGGGAATCTGTTGCTGCTCTCTT
CAAATCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_j13.g1 MSMg01no173_j13.g1 CHROMAT_FILE:
MSMg01no173_j13.g1 PHD_FILE: MSMg01no173_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:18 2005
         (287 letters)



>mm_chr13_116199627_116200313
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   aacatttatttatctcagattgataagcaagctttggcttgttttcatcagctccaaatc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aacatttatttatctcagattgataagcaagctttggcttgttttcatcagctccaaatc 261

                                                                       
Query: 62  agctttgacatagaaatgttgacactacaacctgggctcaaatttgatcacatgctttta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agctttgacatagaaatgttgacactacaacctgggctcaaatttgatcacatgctttta 321

                                                                       
Query: 122 cagaatgggtgaccagtagtataggattcctctaaactgacagttcttgaatgtactcta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cagaatgggtgaccagtagtataggattcctctaaactgacagttcttgaatgtactcta 381

                                                                       
Query: 182 tggctttaaatataatagcatttgaaaggcttgctctacactaagagggtttgtagcatt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggctttaaatataatagcatttgaaaggcttgctctacactaagagggtttgtagcatt 441

                                                         
Query: 242 cttgaacaaatgtggttttaagtactgttctgtgttattcccagaa 287
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttgaacaaatgtggttttaagtactgttctgtgttattcccagaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)