BAC Information

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BAC

Clone NameMSMg01-174M01
Chromosome13 (Build37)
Map Location 77,264,451 - 77,363,481
singlet/doubletdoublet
Overlap gene2210408I21Rik, LOC631139
Upstream geneAK129128, Gm276, Mctp1, LOC666603, EG666607, Ankrd32
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174M01.T7 (MSMg01no174_m01.b1)MSMg01-174M01.TJ (MSMg01no174_m01.g1)
ACCAG369958AG369959
length696733
length of high quality
(start - end)
514 (46 - 559)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no174_m01.b1 PHD_FILE: MSMg01no174_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:42 2005CHROMAT_FILE: MSMg01no174_m01.g1 PHD_FILE: MSMg01no174_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,264,451 - 77,264,960)(77,363,190 - 77,363,481)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCACTGCTTCAAATTTATGAAATCCATCCTACCTTACAAGAGA
GTCACTCCGCTTATCTGCCCTAACAAGGAGAACAACTTTCCATCTGTGGA
AGGCCCCAGGAGCACCAGTCCGTTTCAGCTCTTCACGCCATCTTTTAGGT
GCAGATTGCATTTGAGGTGAATAATGGGAGTCTTTTTCAATTTTATATCC
CCATTCATAAGTTGTTTCATCAAGCCATCTGCCACTTTTGGCACTGTGAA
TTATGTAATCCTTTGTTAATACCCATTTTCCTAGAAAGCAAATGAACTGT
CTGTCACAAAAGAATTTTTAATTCTGCTAAATGATAAACAATAAAGACCA
AATAACAACTAAAAGACATCCTTTTTTTTGTACACGAGATTATGAGAGAC
TGCCAAAATTATTATTAAAATAAAATTCAAGAGGCCTTCAATATCACTGA
ACATTGTATATATTCTTTTCTATGATACATTGCCATAATACTAAGTAGTA
CTACGTGAACTATGAAGTTTTAAATGAAATGTAGCATTACTTTGACTATT
TATACTAAATTAACTTACTAAATTAAATACATTCCCTGGGATAAATTAAA
TTTAATGGAGTTAGGGAATTTTTCAAAAGGGGGAATTTATTTCGTT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAACTTAGGTCCTCAACACTGAGC
AGTAGAGCACTTTACTTTAGCCATCTCACCGGCTCCCATATTTTTGCCTT
TAATTTTTCTTTCCTGATAGTTTTGGGTTAAGACAGGTATTAGAGTAAAT
TTTGCACCCATAGTCATGACTGGCGGTGGATGTGTGGTTTGAGAGGTTGT
AGGGTTTGAGGTCAGTCTTCTTAACCCACTGAGAGCCTCTGCTTGACAAA
GAGGTTCATTCTCCTCCCCTAAGAGTTACCATGGAGTGAATATCACTTTG
CTTCACATGCCAAGAAGATCTATTTAGGGCACAGACAGAGTCATCTGAAG
CCATTCTTCTAGGCCAGTGAGAAAAACTGAAAAGAACCTGCTTCTATTGT
TACCTTTTTACAGTTCTCAGGCGGCACTGGCTCTATGCGCTGTTACCTAA
ACTTACTGCACAACGATAACAATTCTCTCACACTCCACTCTGCCTTCTCT
GACAGAAAAGGTTGGTGTTACATTAGCCGGAGATCAGACTTCTTGCTATT
TGACCAGGCGGGATACTCTGTTTACTATCTTTCTTGTTATCTATCTTTCT
TGTTTGGTTTGTTTTGTCTGACAAAGAGCAGGAGCAAGAATATCTGGTAA
GAAATCAGTGTGGGCATCAAAGAATGGTCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_m01.b1 MSMg01no174_m01.b1 CHROMAT_FILE:
MSMg01no174_m01.b1 PHD_FILE: MSMg01no174_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:42 2005
         (514 letters)



>mm_chr13_77264247_77265160
          Length = 914

 Score =  986 bits (510), Expect = 0.0
 Identities = 510/510 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcactgcttcaaatttatgaaatccatcctaccttacaagagagtcactccg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcactgcttcaaatttatgaaatccatcctaccttacaagagagtcactccg 264

                                                                       
Query: 65  cttatctgccctaacaaggagaacaactttccatctgtggaaggccccaggagcaccagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttatctgccctaacaaggagaacaactttccatctgtggaaggccccaggagcaccagt 324

                                                                       
Query: 125 ccgtttcagctcttcacgccatcttttaggtgcagattgcatttgaggtgaataatggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccgtttcagctcttcacgccatcttttaggtgcagattgcatttgaggtgaataatggga 384

                                                                       
Query: 185 gtctttttcaattttatatccccattcataagttgtttcatcaagccatctgccactttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtctttttcaattttatatccccattcataagttgtttcatcaagccatctgccactttt 444

                                                                       
Query: 245 ggcactgtgaattatgtaatcctttgttaatacccattttcctagaaagcaaatgaactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcactgtgaattatgtaatcctttgttaatacccattttcctagaaagcaaatgaactg 504

                                                                       
Query: 305 tctgtcacaaaagaatttttaattctgctaaatgataaacaataaagaccaaataacaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctgtcacaaaagaatttttaattctgctaaatgataaacaataaagaccaaataacaac 564

                                                                       
Query: 365 taaaagacatccttttttttgtacacgagattatgagagactgccaaaattattattaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaagacatccttttttttgtacacgagattatgagagactgccaaaattattattaaa 624

                                                                       
Query: 425 ataaaattcaagaggccttcaatatcactgaacattgtatatattcttttctatgataca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ataaaattcaagaggccttcaatatcactgaacattgtatatattcttttctatgataca 684

                                         
Query: 485 ttgccataatactaagtagtactacgtgaa 514
           ||||||||||||||||||||||||||||||
Sbjct: 685 ttgccataatactaagtagtactacgtgaa 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no174_m01.g1 MSMg01no174_m01.g1 CHROMAT_FILE:
MSMg01no174_m01.g1 PHD_FILE: MSMg01no174_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:42 2005
         (292 letters)



>mm_chr13_77362990_77363681
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacttaggtcctcaacactgagcagtagagcactttactttagccatctcaccggctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aaacttaggtcctcaacactgagcagtagagcactttactttagccatctcaccggctcc 433

                                                                       
Query: 61  catatttttgcctttaatttttctttcctgatagttttgggttaagacaggtattagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catatttttgcctttaatttttctttcctgatagttttgggttaagacaggtattagagt 373

                                                                       
Query: 121 aaattttgcacccatagtcatgactggcggtggatgtgtggtttgagaggttgtagggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaattttgcacccatagtcatgactggcggtggatgtgtggtttgagaggttgtagggtt 313

                                                                       
Query: 181 tgaggtcagtcttcttaacccactgagagcctctgcttgacaaagaggttcattctcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgaggtcagtcttcttaacccactgagagcctctgcttgacaaagaggttcattctcctc 253

                                                               
Query: 241 ccctaagagttaccatggagtgaatatcactttgcttcacatgccaagaaga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccctaagagttaccatggagtgaatatcactttgcttcacatgccaagaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)