BAC Information

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BAC

Clone NameMSMg01-175I10
Chromosome13 (Build37)
Map Location 56,727,007 - 56,727,194
singlet/doubletsinglet
Overlap geneTgfbi
Upstream geneCaml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2
Downstream geneSmad5, EG627415, Trpc7, LOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175I10.T7 (MSMg01no175_i10.b1)MSMg01-175I10.TJ (MSMg01no175_i10.g1)
ACCAG370491
length729760
length of high quality
(start - end)
---188 (124 - 311)
definitionCHROMAT_FILE: MSMg01no175_i10.b1 PHD_FILE: MSMg01no175_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:37 2005CHROMAT_FILE: MSMg01no175_i10.g1 PHD_FILE: MSMg01no175_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXA
ACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAGAAAGCAACAGCCCCAATGATCTCAC
TGTGGACAGAGGATTTTACCCCGTAACTGGGGATGCCCTTACCCCATTGG
GATAGTGATGGATCTGGATGTTGGAATTCTGGTACATGGAGGTGAGGGTC
ATGCCGTGCTTGAGCTCATCGGTCAGGACCCGCCTGTCCACCATGTGGTA
GCGGAGAGCATTGAGCAGTTCAATGTTGACGTTGCTCACCAGGGAGTCCA
GCACTTCCTAGATTGATTGACATGACCGTTAAGAGGCAGCAGCCCTGTGT
TCATTTTTTTTCACCCGCCCCCCCCGGACCTAGATGCCTCTTCTAATAGG
TAGTTCTCCCCCACCGAACATCTGAGAATAGGTTGGGGTACACTGTTTCC
AGTGCACTGTCGAGGACTGCTTTCTCTTTCCTTGCGTCTGGTAGCATATC
ACCGGAACGATCGTTCCTACAAAATCCCACTGTGCTGCCTACACCTTTGT
GTAAATGGCACCTCCTATTCATTCCCTCTGTTCTTAAGGTTCTTTCTCTC
CGTATTCATACGTATACCAGTTCTCTCACTGTCTTATACCTACTCATCGT
CTCCCCTTTTCCTGTTCTCCCTTCTATATATTGCGATCCTTTTTTTCCCT
TTGTGCCACATTTAATAACCCCTCCTGATTGTTGCTCTCTTTCTCCCATC
TTTTCTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_i10.g1 MSMg01no175_i10.g1 CHROMAT_FILE:
MSMg01no175_i10.g1 PHD_FILE: MSMg01no175_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:37 2005
         (188 letters)



>mm_chr13_56726807_56727394
          Length = 588

 Score =  356 bits (184), Expect = e-103
 Identities = 187/188 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taactggggatgcccttaccccattgggatagtgatggatctggatgttggaattctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taactggggatgcccttaccccattgggatagtgatggatctggatgttggaattctggt 329

                                                                       
Query: 61  acatggaggtgagggtcatgccgtgcttgagctcatcggtcaggacccgcctgtccacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acatggaggtgagggtcatgccgtgcttgagctcatcggtcaggacccgcctgtccacca 269

                                                                       
Query: 121 tgtggtagcggagagcattgagcagttcaatgttgacgttgctcaccagggagtccagca 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 tgtggtagcggagagcattgagcagttcgatgttgacgttgctcaccagggagtccagca 209

                   
Query: 181 cttcctag 188
           ||||||||
Sbjct: 208 cttcctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)