BAC Information

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BAC

Clone NameMSMg01-175J18
Chromosome13 (Build37)
Map Location 78,291,344 - 78,291,645
singlet/doubletsinglet
Overlap gene1110033M05Rik
Upstream gene2210408I21Rik, LOC675063, D13Mgi7, 1700013G10Rik
Downstream geneNr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175J18.T7 (MSMg01no175_j18.b1)MSMg01-175J18.TJ (MSMg01no175_j18.g1)
ACCAG370546AG370547
length688707
length of high quality
(start - end)
306 (45 - 350)565 (143 - 707)
definitionCHROMAT_FILE: MSMg01no175_j18.b1 PHD_FILE: MSMg01no175_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:43 2005CHROMAT_FILE: MSMg01no175_j18.g1 PHD_FILE: MSMg01no175_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGTCTCAGTGAGAACTGCCTCAGCCTTTAAGTAATTTAGATGAA
AGGCCTGTACCACCATATCAAACTTAGCAGGTCTTTCATTTAGTTGGTTC
TTTGGGGTTTTGTTCATGTGAAGTTCTAGATTCCCACCTTGTGTTTGATG
CTTCTACCAGAATGGAAAACTGACAAGAACCATAGACACCCTCCTTGTCA
TGATACATCAGCCAAAATAAATCTCTCTTGGGATAGAAAACATGACAAAT
GCAGAAAAGGACAAATATGTGGGTTTATTACTCTGACTACTGATACTGTG
TTTTTGAATTCTCCGCCCCCGTTTTCTGGAACCTGGGGAAGCTTAAAGAA
CCAGGCTAGAGAAAAAATAAAATGCTGTAAGCCTTTGCAAGTTGTGATTC
TAATGGGAGCACAAAAGACCTGAATGTTGGCAGGTGTGGGCCATTATGCC
TATTCTTATGATGTTACAAATGGAAATAAGACACTACAGGGAGTTGGGCT
TGAGGTCATTCATTTCACATTGTGCTCAACACCTTGACTGCATTTTGTCC
ATGTCCTGAAACTTCATGGGATGTTGGATTTGAAGGTAATAATAGTAGCT
AATATGGTAGAAGAATTTCAAGGCAGTCTAGCATTTGC
CCCGTAAAACCCCCNCCCCACCATGATAXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCGAGAAATTCAATAA
CTCACTTAAAGAAATACAGGAGAACACTGCTAAATATTTCCCAGTCCTTA
AAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAA
CAGGAAAACACAACCAAACAGGTGATGGTAATGAACAAAACCATACTAGA
CCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGC
TGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATC
AGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTC
CATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGA
TCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAAC
CTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACC
AGCAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCAAATATAAAGA
AAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTG
GACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACACCAAATGC
ACTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_j18.b1 MSMg01no175_j18.b1 CHROMAT_FILE:
MSMg01no175_j18.b1 PHD_FILE: MSMg01no175_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:43 2005
         (306 letters)



>mm_chr13_78291140_78291845
          Length = 706

 Score =  569 bits (294), Expect = e-166
 Identities = 300/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggtctcagtgagaactgcctcagcctttaagtaatttagatgaaaggcctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggtctcagtgagaactgcctcagcctttaagtaatttagatgaaaggcctgt 264

                                                                       
Query: 65  accaccatatcaaacttagcaggtctttcatttagttggttctttggggttttgttcatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accaccatatcaaacttagcaggtctttcatttagttggttctttggggttttgttcatg 324

                                                                       
Query: 125 tgaagttctagattcccaccttgtgtttgatgcttctaccagaatggaaaactgacaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaagttctagattcccaccttgtgtttgatgcttctaccagaatggaaaactgacaaga 384

                                                                       
Query: 185 accatagacaccctccttgtcatgatacatcagccaaaataaatctctcttgggatagaa 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 accatagacaccctccttgtcatgatacatcagccaaaataaatctctctagggatagaa 444

                                                                       
Query: 245 aacatgacaaatgcagaaaaggacaaatatgtgggtttattactctgactactgatactg 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 aacatgacaaatgcagaaaaggacaaaaatgtgggtttattactctgactactgatactg 504

             
Query: 305 tg 306
           ||
Sbjct: 505 tg 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)