BAC Information

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BAC

Clone NameMSMg01-176C15
Chromosome13 (Build37)
Map Location 112,548,707 - 112,549,158
singlet/doubletsinglet
Overlap geneMap3k1
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3
Downstream geneLOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176C15.T7 (MSMg01no176_c15.b1)MSMg01-176C15.TJ (MSMg01no176_c15.g1)
ACCAG370940AG370941
length1,2141,148
length of high quality
(start - end)
565 (133 - 697)459 (130 - 588)
definitionCHROMAT_FILE: MSMg01no176_c15.b1 PHD_FILE: MSMg01no176_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:35 2005CHROMAT_FILE: MSMg01no176_c15.g1 PHD_FILE: MSMg01no176_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCATATTNTTAAACATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTCACCTGAGGAATACCCCAATAAAAGACCAGCACCTGAA
AAAAGGTTCAACATCCTTACCCTTCAAGGACATATAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCCGCAATACCTCTC
CTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTC
CACTATCTTCATATTATCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGAAATGGATACAGAAAATGTGGCACATTTAC
ACAATGGAGTACTACTCGGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAAT
CACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCC
AGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACGCATGAA
ACCCAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAA
TTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCT
ATGTCGAAAGGATGGACCATCTAGAGCCTGCCATATCCAGGGTTCCATCC
CATAATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCAAGATTTT
GCTGAAAGGACCCAGATATAGCTGGCTCTTGTGAGACTATGCCCAGACCT
AGCAAACACAGAAGTGGATGCTCCCCACTATTGGATGAACCCCAGGGCCC
CCCCAAGGAAGAGCTAGAGAAAGTACCCCAGGAAGCTAAAGGGATTTGCA
ACCCTTATTAGTAGAACCACCTTTATGAATTATCCTGTTACCTCAAAACT
CTTTGACACTTAGTTACCTTTGGATTCAAAAAAAGGGCCCTATCCTGGTC
CTCTCCCTGGAAAAGAAAGGCCCCTTTGTACTGGTTAAACTTTTATTTTC
CCCCATANAATGGG
CGTTTCTCTTTTTAACATGGATGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCCTGAAGTCCCCTTATACGNGNGGC
CATTCATGCGTCTTCCCTTAAAGAGCCCCTAGATCTGACTGTTAAATTGT
GAGTTAGAAAAAAAGATTGCAAGAGGTAGCTTAAGCAGATTAGGTGAGAA
ATCTTGCCAGTGAGACGGTGCAGCGACCATTGGCACTTGTCACTTGTCAC
TAACTGTGACAGACTTGGGTTTGACCTCCAGAACACACACAGACGGAACT
ACATGGCTTCTGCAAGTGGTCCTCTGATTTTCTCATGGGCACCCCATCCC
TCTTCCTCTTTTTCTTCCTTCCTCCCCGTCTACCTGTCTGTCTGTATATC
TATCTATTTTTCTATCATTGTCTGTCTGTCTAATTTATAAGAATTACTCC
TAAGACTAGGATTCTAAGTGAGGATGGCTTTGAGCTCCGGGGGTCACTGG
CAGTGCCTGAAGACATGCTTCGTGTTTCCCGTCTCATGACGGATGGGCAG
CAATGAGGGTTTAACGCTGCTAGCCGTCTAGTGCTTAGAAGCTGAGCACG
TGCTCAACATCCTACAGCGACAGCAGCTCTGGTGTCCCAGCCCCAGGTCT
GCCCATCCACAACACTGCTGAGATGGAGAAACAAGGCTCCAAGATGGGGG
TCTCTGAATGGCAAAGGTCAAACTAGCCTGCGAATCACTGTTCTATCATG
CTACCCTGCTCCTGGAAGACAAGTCGTTGCGGTCCACTGAGAAAGTCTAC
ATCTACTGCTTGTGCCACAGATAGCGCCAATTGTCATTTTGACAGACTCT
GGGATTACACATGGTCCGTGCCTCTGCACCCCTGTTGGGGATCGTCCTGA
TTTTTCCTAACCCATGTGGTGAAGCATTTGAAATGGGGCCCCGGAATTTT
GGTCATGGATGTTAAAAAACTCCTAAATTTATGTATTTATTGTTGGAATC
CCCTTTGTTTTTTCCCCTGGTTTTCCTTGAAAGGAGTGGAATGGGGGTCC
CCTCCTTCTCCTAAAACTTTTTTTTATAAACGCGGGTAACATAATTTTTT
TGTGATATTGTTTAGCCCCTCAATAAAAACAACTTCCCTCTTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_c15.g1 MSMg01no176_c15.g1 CHROMAT_FILE:
MSMg01no176_c15.g1 PHD_FILE: MSMg01no176_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:35 2005
         (459 letters)



>mm_chr13_112548507_112549365
          Length = 859

 Score =  748 bits (387), Expect = 0.0
 Identities = 439/459 (95%), Gaps = 7/459 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatctgactgttaaattgtgagttagaaaaaaagattgcaagaggtagcttaagcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tagatctgactgttaaattgtgagttagaaaaaaagattgcaagaggtagcttaaacaga 260

                                                                       
Query: 61  ttaggtgagaaatcttgccagtgagacggtgcagcgaccattggcacttgtcacttgtca 120
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 261 ttaggtgagaaatcatgccagtgagacggtgcagcgaccattggcacttgtcact----a 316

                                                                       
Query: 121 ctaactgtgacagacttgggtttgacctccagaacacacacagacggaactacatggctt 180
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 --aac-gtgacagacttgggtttgacctccagaacacacacagacggaactacatggctt 373

                                                                       
Query: 181 ctgcaagtggtcctctgattttctcatgggcaccccatccctcttcctctttttcttcct 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 374 ctgcaagtggtcctctgattttcacatgggcaccccatccctcttcctctttttctttct 433

                                                                       
Query: 241 tcctccccgtctacctgtctgtctgtatatctatctatttttctatcattgtctgtctgt 300
           |||||||| |||| ||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 434 tcctccccatctatctgtctgtctgtatatctatctatccatctatcattgtctgtctgt 493

                                                                       
Query: 301 ctaatttataagaattactcctaagactaggattctaagtgaggatggctttgagctccg 360
           |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 494 ctaatttataggaattactcctaaggcaaggattctaagtgaggatggctttgagctccg 553

                                                                       
Query: 361 ggggtcactggcagtgcctgaagacatgcttcgtgtttcccgtctcatgacggatgggca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 554 ggggtcactggcagtgcctgaagacatgcttcgtgtttcccgtctcatgacggacgggca 613

                                                  
Query: 421 gcaatgagggtttaacgctgctagccgtctagtgcttag 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gcaatgagggtttaacgctgctagccgtctagtgcttag 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)