CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTGACTATACTTGAGGAGCAATCCCCACACTCTCACTATGTTC
ATTTATTACTCATGTCCCATGTGCCCAACAGATGTCCTCCCAGAATCCCC
TGCCGGCTTCTCTGCTTTTAGCCACTGAGTTATATCATACCTGTACCTTC
TATTGGTCAGGCTCCTCCTCTGTTCCCTGTCTATAGATGCATTCCCACTT
ATAACAAACCCTATGATGACCTGCTCTAGGTTGGGTATCTGTAAAGCAGT
GACTTAGTACATACAGTTTGTAGGTAAGTAATTTGGGGGCACTGAAGAGA
ATGAAGGAGGATAATGGAGAAAAGCCGACGGATGCCTGTGTTAGCTGCAA
GTGAATGAGATTCATCCACAGATCCTATCCTCACTGGAATGCGTGAGTGG
AGAATTAGAAAATCATTCACCACATCTATTTATTTAAAGCTAAGCTTGCA
CTTATCCAACCGTCCCTAGAAACCTATCCAAGAGACTAAAACCATGAGCA
CCTAAAGATTTGTGTGTAAATCTTTGCATATCAGTCAACACTTGGAAATA
ACCCAACCGACACTGACAGATGGAGATGCATGTTCTAGTGAAGCCATACG
AGAGAACTCTTCACACGGTAGCGACCTGAACTGCGGAAAGGGAAGATTGT
CATTTTAATGCTAAGAAAATAGGGAATTT

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTAATTGTTTTAGAAGGAGAT
TATTAATGTTTTCCATCAGGGGTCGATGTTAGGCTTAGGAGATCTAAAGG
CAGCATATTTGGCAAAGAAAGCCAAAAACCTCAATTAATTTAATTTGACA
CTGTGTGTATGTACATGTATGATGTGTGTGTGTGTGTGTGTGNNNNNNNN
NNNNTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNNNNTNNT
TNNNNTNNNNNNNNNTTTTTTTTTTTTTNNTTNTTTTTTTTTTTTNTTTT
TTTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNNNTNTNNNN
NTNTTTNTTTTTTTTTTTTCCCCCCCCCAAAAAAAAATAAATTTGTGGGG
GGGGGGCGTCCTATTTCTAATTTTCTACCACTGTCTTTTCTATATCTTAC
TCCTTCCTTTCTTTATATAATCCACCTCACATACTCTTATTTACTAAATA
TTTATTTTTTTGCATATTCTTTTTATATTATTTATTTTCGACTACACGGA
TTCCTATCCACCTATATTCACCTAAATTTTCTTCTTTTTAACCTATTACT
TTCCATCTTTCTTTTATTAACCCTCATCTCGCTTTTATTTATCATTTACT
TCCCAATATAGATTCTGGCAACGTGAAACATATATTGTTTTTCTTGCACT
ATTTTCTTTACATCTCTCTTTTCTCG

Query= MSMg01no178_d21.b1 MSMg01no178_d21.b1 CHROMAT_FILE:
MSMg01no178_d21.b1 PHD_FILE: MSMg01no178_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:59 2005
         (316 letters)



>mm_chr13_96052925_96053640
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtgactatacttgaggagcaatccccacactctcactatgttcatttattac 64
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattccagtgactatagttgaggagcaatccccacactctcgctatgttcatttattac 264

                                                                       
Query: 65  tcatgtcccatgtgcccaacagatgtcctcccagaatcccctgccggcttctctgctttt 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatgtcccatgtggccaacagatgtcctcccagaatcccctgccggcttctctgctttt 324

                                                                       
Query: 125 agccactgagttatatcatacctgtaccttctattggtcaggctcctcctctgttccctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccactgagttatatcatacctgtaccttctattggtcaggctcctcctctgttccctg 384

                                                                       
Query: 185 tctatagatgcattcccacttataacaaaccctatgatgacctgctctaggttgggtatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctatagatgcattcccacttataacaaaccctatgatgacctgctctaggttgggtatc 444

                                                                       
Query: 245 tgtaaagcagtgacttagtacatacagtttgtaggtaagtaatttgggggcactgaagag 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 tgtaaagcagtgacttagtacatacagtttgtaggtaagtaatttgggggcattgaagag 504

                       
Query: 305 aatgaaggagga 316
           ||||||||||||
Sbjct: 505 aatgaaggagga 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_d21.g1 MSMg01no178_d21.g1 CHROMAT_FILE:
MSMg01no178_d21.g1 PHD_FILE: MSMg01no178_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:59 2005
         (166 letters)



>mm_chr13_96193533_96194098
          Length = 566

 Score =  321 bits (166), Expect = 1e-92
 Identities = 166/166 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagtaattgttttagaaggagattattaatgttttccatcaggggtcgatgttaggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagtaattgttttagaaggagattattaatgttttccatcaggggtcgatgttaggctt 266

                                                                       
Query: 61  aggagatctaaaggcagcatatttggcaaagaaagccaaaaacctcaattaatttaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggagatctaaaggcagcatatttggcaaagaaagccaaaaacctcaattaatttaattt 206

                                                         
Query: 121 gacactgtgtgtatgtacatgtatgatgtgtgtgtgtgtgtgtgtg 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gacactgtgtgtatgtacatgtatgatgtgtgtgtgtgtgtgtgtg 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)