XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAAGCGCGGAATTCTCCT
GTCTCCCATTTCCAGTAACTGGGTTTACAGGCTTGCCCCAACCACGTGGC
TATTTATATGGTGCTCAGACCTAGGAACTTGGCCTCTAAGATTTTGTGGC
AATCACTTTACAGTCTGAGCCATCTCTCAGCCTGGCAAGTTATTTTTAAA
AGGATTTTTTTTGGGGGGGGGTCTCCCTAATACATTTTAGGTAAAGCCTT
TATAGGCCAGTTGTGTTTATGGCTGGCGCTTGAGAATACCTCTAGACTAA
AAGTATACAGACTCATGAGAATAAAGGAAGTGGGGCATCATCCAAATGCT
TGCTCCGTGACAAGAATGGAACCTTCTGCGCTTAAGGAGTTTTTTTGTTT
TTTTTTTTTTATAAGTTGGTGTTTGGGGAAACACTTTGATCCATTTCTCT
ATTCTCTAGTTTTCCAAGAACAACAACATAAATTTTAGATCAACTTTAGA
TACTATAGCTGACAGGTTCTAAATTTCTATGGCTTTCCATCATACAATAC
CTTCTCTGTTATTTTGAGAGATTTATTCCATGTCCTAACTTGGAGTGGAT
GCCTCTTTTCTTGCTATTTTGACTATTTTACGCGAGCCCCGGTTTTGTTT
CGTTTCCTTTCCAACTGTTCTCTTTGACCCATTTGTTTTAAGAACACCTA
TTCTTATCTTCGGGAACTTTTA

GTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTACTGGGGAAGGAATAGCTGACAGAGTGTTG
TGGGGTTTGTTTGCCCTCGTGGACATTCTAATATTCTGTGTTCTGGATCT
TAAGCTATTATAAGTCCCAGCAATTTAATAACTGAGATGAGCTATTAATA
AGTGATGTATTCCTTTCTCTGCCTGAGACTCCTCTAGATTTGGGGAAGTC
TTGAGGGTTTTTTTTTTTTTTTAATTTTCACAGCAATGTAATTCGTTGCA
TAAGTTTGATAAAGATCTGTCTTTCTTGTTGCTTTGACCTAATTGGACAT
TGTGTTTATATAACCACCACCTCACGGACATTGTCTGTGATATCGTACTT
GAGAGTGTTTACCGCCTCAGATAGAACCAGAAACTTTTAAAGAAGTCAGA
CTTGCTTTAGGGAGATGACACAACAAGGCCTACACTGGCAAAGAGACCTG
ATTTCTAGCTCAGACCCGATTATGGGGGTTACCTGTCGTCCGAGTCGGCA
TCAGATGACCTTACGGATCCACAGTGGACATTTTTCTAAACTTACTGATA
CTACCGTTTATATCTATTGCTGAGCGTTTGGTTTACCTTTCCTTTATATA
TACATATACCTATTATATATCCATATCTTTTATTTATTCTATAATTATCT
CCTCTCCTCTTCTTTTTTCCCCCTCTCN

Query= MSMg01no179_j13.b1 MSMg01no179_j13.b1 CHROMAT_FILE:
MSMg01no179_j13.b1 PHD_FILE: MSMg01no179_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:39 2005
         (409 letters)



>mm_chr13_42311201_42312010
          Length = 810

 Score =  729 bits (377), Expect = 0.0
 Identities = 406/427 (95%), Gaps = 18/427 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaactgggtttacaggcttgccccaaccacgtggctatttatatggtgctcagaccta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agtaactgggtttacaggcttgccccaaccacgtggctatttatatggtggtcagaccta 260

                                                                       
Query: 61  ggaacttggcctctaagattttgtggcaatcactttacagtctgagccatctctcagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaacttggcctctaagattttgtggcaatcactttacagtctgagccatctctcagcct 320

                                                                       
Query: 121 ggcaagttatttttaaaaggattttttttgggggggggtctccctaatacattttaggta 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ggcaagttatttttaaaaggattttttttggggggggttctccctaatacattttaggta 380

                                                                       
Query: 181 aagcctttataggccagttgtgtttatggctggcgcttgagaatacctctagactaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcctttataggccagttgtgtttatggctggcgcttgagaatacctctagactaaaag 440

                                                                       
Query: 241 tatacagactcatgagaataaaggaagtggggcatcatccaaatgcttgctccgtgacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatacagactcatgagaataaaggaagtggggcatcatccaaatgcttgctccgtgacaa 500

                                                                       
Query: 301 gaatggaaccttctgcgcttaaggagtttttttgtttttttt------------------ 342
           ||||||||||||||||||||||||||||||||| ||||||||                  
Sbjct: 501 gaatggaaccttctgcgcttaaggagttttttttttttttttctttttcttttttttttt 560

                                                                       
Query: 343 tttttataagttggtgtttggggaaacactttgatccatttctctattctctagttttcc 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttataagttggtgtttggggaaacactttgatccatttctctattctctagttttcc 620

                  
Query: 403 aagaaca 409
           |||||||
Sbjct: 621 aagaaca 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space:   320400
Effective search space used:   320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)