BAC Information

Click to search

BAC

Clone NameMSMg01-180H23
Chromosome13 (Build37)
Map Location 119,532,996 - 119,533,652
singlet/doubletsinglet
Overlap geneFgf10
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180H23.T7 (MSMg01no180_h23.b1)MSMg01-180H23.TJ (MSMg01no180_h23.g1)
ACCAG373960AG373961
length737747
length of high quality
(start - end)
---657 (64 - 720)
definitionCHROMAT_FILE: MSMg01no180_h23.b1 PHD_FILE: MSMg01no180_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:45 2005CHROMAT_FILE: MSMg01no180_h23.g1 PHD_FILE: MSMg01no180_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCTAAACGACTCACAATTTCGAAGCGGGGCGGAGAGAACAAGCCTTC
CCAAAGAAAGGAGACACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAA
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCAGTTCCACCCAACCCTTTAATAACACGTTCATGAG
TAGTCTATACTTGCCCAACAGTTTTTGTATCTGCAAAGTAATGAGAAAAT
AAAAACGTAACCAGAAGAAAGACAATTTGCCCTGAACCCAGAACTAGCAA
GATGAGGCTTTCTATAATTCTCTGAACTTTCAGGCTTGAAGTCTCCCCAG
ATCAGAGATTACTCAGCTTCTTTTGAATAAACCATCAAATTGCTTCAACT
CTAGGGTTTTGTTGTGTCCATCCCAAAATAACTTGACACGATTCCAAAAT
TTTTTCTTTTTTTTATAATCCCAGGAAACTTCAGGTAGTGCCAGTGATCT
AAGTGGCATCTCCTACCTACACAGACATATATTTTCTTTGTTACGATCTT
TATTTGCCAGCAGTTTGGCAGTTGAAACAGGAAGAAGTGAAACATTAGAT
TTTTTTTTTTAAGAGCAAAGTATATGGGGAGGAAAGGGGATACAGGGTCA
CCCGGTTAGACTAAAGTGTATAATCCTTTTCTCTCTCACCTCATTCCTGT
TTCTCCAGAATGGCAGTTGGGTAATACTGAATCAGTTTGATAAGGCTGCC
TTACCCTTCCTAACAACCAAAGCCATCTTAGACACCTTTTCACGTACACT
CCCTCCATTAAAGCTTCAGAGAACTTTAGAATTGCTTTTTAAACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_h23.g1 MSMg01no180_h23.g1 CHROMAT_FILE:
MSMg01no180_h23.g1 PHD_FILE: MSMg01no180_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:45 2005
         (657 letters)



>mm_chr13_119532796_119533852
          Length = 1057

 Score = 1247 bits (645), Expect = 0.0
 Identities = 654/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagttccacccaaccctttaataacacgttcatgagtagtctatacttgcccaacagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 201 tcagttccacccaaccctttaataacacgttcatgagtagtctatacttgtagaacagtt 260

                                                                       
Query: 61  tttgtatctgcaaagtaatgagaaaataaaaacgtaaccagaagaaagacaatttgccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtatctgcaaagtaatgagaaaataaaaacgtaaccagaagaaagacaatttgccct 320

                                                                       
Query: 121 gaacccagaactagcaagatgaggctttctataattctctgaactttcaggcttgaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacccagaactagcaagatgaggctttctataattctctgaactttcaggcttgaagtc 380

                                                                       
Query: 181 tccccagatcagagattactcagcttcttttgaataaaccatcaaattgcttcaactcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccccagatcagagattactcagcttcttttgaataaaccatcaaattgcttcaactcta 440

                                                                       
Query: 241 gggttttgttgtgtccatcccaaaataacttgacacgattccaaaattttttcttttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggttttgttgtgtccatcccaaaataacttgacacgattccaaaattttttcttttttt 500

                                                                       
Query: 301 tataatcccaggaaacttcaggtagtgccagtgatctaagtggcatctcctacctacaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataatcccaggaaacttcaggtagtgccagtgatctaagtggcatctcctacctacaca 560

                                                                       
Query: 361 gacatatattttctttgttacgatctttatttgccagcagtttggcagttgaaacaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacatatattttctttgttacgatctttatttgccagcagtttggcagttgaaacaggaa 620

                                                                       
Query: 421 gaagtgaaacattagatttttttttttaagagcaaagtatatggggaggaaaggggatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagtgaaacattagatttttttttttaagagcaaagtatatggggaggaaaggggatac 680

                                                                       
Query: 481 agggtcacccggttagactaaagtgtataatccttttctctctcacctcattcctgtttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggtcacccggttagactaaagtgtataatccttttctctctcacctcattcctgtttc 740

                                                                       
Query: 541 tccagaatggcagttgggtaatactgaatcagtttgataaggctgccttacccttcctaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccagaatggcagttgggtaatactgaatcagtttgataaggctgccttacccttcctaa 800

                                                                    
Query: 601 caaccaaagccatcttagacaccttttcacgtacactccctccattaaagcttcaga 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaccaaagccatcttagacaccttttcacgtacactccctccattaaagcttcaga 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)