BAC Information

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BAC

Clone NameMSMg01-181D18
Chromosome13 (Build37)
Map Location 101,698,491 - 101,698,878
singlet/doubletsinglet
Overlap genenone
Upstream geneMccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865
Downstream geneLOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181D18.T7 (MSMg01no181_d18.b1)MSMg01-181D18.TJ (MSMg01no181_d18.g1)
ACCAG374473AG374474
length758745
length of high quality
(start - end)
389 (142 - 530)87 (187 - 273)
definitionCHROMAT_FILE: MSMg01no181_d18.b1 PHD_FILE: MSMg01no181_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:39 2005CHROMAT_FILE: MSMg01no181_d18.g1 PHD_FILE: MSMg01no181_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTTTCAAAATCCCAGAGAAA
ATAAAATTTAAAATTACCTGGGTGGGTTCAAGCAATAGCGTTAAAGTACA
AGAAAGGTCTGAATCAACAAGAAGGGGAATTGTTGCCTTATTTGAAAAAA
GATCTATTTCACTAAGTGATCCGGGAATGAGAAAAAAAATTCAAAATTTA
TTTCCTTTTGGTATCTGGAAGGATTTCCTTTGAATTCATGAACAAAAACT
GGCCAAAACTAAACACAGGCTTCCTGACTCTAGGAAATACCTTTCTTTTC
CTTCTGGTTTGTTCTCAGAGATGACCCCCCACACATTTCTGTTCTCTCTC
TTAGTCATCCGTACCTCTCCCCCCCCTTCTATCCTCCCCCCACACCTGAT
TCTTACTTCTCCATCCCAGTCTCTTCATTCTTTTCCCACCCAGTTCCCTC
CTTCCATCCACCTCCCATATCTATTTTATTTCTCGGTCCGCTTGTTATTT
CCCCATTCCTCTCTCGTTTCCGGAACTGGAATTCTCCCCCGCCCCACACC
CCGCTGCCTCTTGTTTGCCCCCCCCCCCCACCCCCCCTTCTTTTTTTATT
TATCGATTTTCTCCCTCCACTTTCTTTTTTTCATATTTTTTATCCCCCCT
CCCCCCCCCCCCCCATTTTCTCACCTATATTATCATATGCACCCTCTCTT
AATATAAG
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGAATAGTCTCAAATTTCTTTACTTCTTCCCTGACCCAGAGAT
CATTGAGTAGAGAGCTGTTCAATTTCCTTGAGTTTTTAGGCTTTCTGGAG
TTGCTGTTGTTGAAGTCCAGTTTAATCCATGGTAGTCTGATAAGATACAA
CATATTATATCTGTTGAAGTTTGCTTTGTGACTAAATATATGGTCAATTT
TGGGGAAAGATCCATGCAGTGTTATAAAGATGGGATATTATTTTGTGTTC
AGGTGAAATATTCTATAGATGTCCATTTGTTCTATTTGATTCATAATGTC
TATTAACTTTGTTATTTCTGTTTACGCCCCGCCTGGATGAGCTGGCCTAT
AGTGATAGTGGTGTGACCCCCCATTGATGTATTTTGGTATGTTGCAACAT
GCCCCTCTCCGTGTGAATGAATCTAGATGATGTGTGATGTTTGATGCATG
TGATACGTACCTGCAATTAATATGACGAATTTATGCAATTCCTATTCTGA
TGGATGGACTCCAAAGAGTATCATCCTGAATGTAGCTAACCTATCACATA
GGAACTTCACATCTTATGTTCCTCCTGATTTTTGGCTTTTACCCTTTAAA
TCTTATTAATCCCCCCCAGCTTCCATTTTTTTTTTCTTTTACACACGCAC
TTCTTTTATATATTGCTTCACCCCTTTTCCTCCCCTTTTTATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_d18.b1 MSMg01no181_d18.b1 CHROMAT_FILE:
MSMg01no181_d18.b1 PHD_FILE: MSMg01no181_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:39 2005
         (389 letters)



>mm_chr13_101698291_101699079
          Length = 789

 Score =  698 bits (361), Expect = 0.0
 Identities = 382/389 (98%), Gaps = 1/389 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtacaagaaaggtctgaatcaacaagaaggggaattgttgccttatttgaaaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagtacaagaaaggtctgaatcaacaagaaggggaattgttgccttatttgaaaaaag 260

                                                                       
Query: 61  atctatttcactaagtgatccgggaatgagaaaaaaaattcaaaatttatttccttttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctatttcactaagtgatccgggaatgagaaaaaaaattcaaaatttatttccttttgg 320

                                                                       
Query: 121 tatctggaaggatttcctttgaattcatgaacaaaaactggccaaaactaaacacaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctggaaggatttcctttgaattcatgaacaaaaactggccaaaactaaacacaggct 380

                                                                       
Query: 181 tcctgactctaggaaatacctttcttttccttctggtttgttctcagagatgacccccca 240
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgacac-aggaaatacctttcttttccttctggtttgttctcagagatgacccccca 439

                                                                       
Query: 241 cacatttctgttctctctcttagtcatccgtacctctccccccccttctatcctcccccc 300
           || ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 440 cagatttctgttctctctcttagtcatctgtacctctccccctccttctatcctcccccc 499

                                                                       
Query: 301 acacctgattcttacttctccatcccagtctcttcattcttttcccacccagttccctcc 360
           ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 acacctgatccttacttctccatcccagtctcttcattcctttcccacccagttccctcc 559

                                        
Query: 361 ttccatccacctcccatatctattttatt 389
           |||||||||||||||||||||||||||||
Sbjct: 560 ttccatccacctcccatatctattttatt 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)