BAC Information

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BAC

Clone NameMSMg01-181G13
Chromosome13 (Build37)
Map Location 54,733,825 - 54,734,111
singlet/doubletsinglet
Overlap geneUbxd8
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb
Downstream geneRn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181G13.T7 (MSMg01no181_g13.b1)MSMg01-181G13.TJ (MSMg01no181_g13.g1)
ACCAG374594AG374595
length736736
length of high quality
(start - end)
591 (40 - 630)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no181_g13.b1 PHD_FILE: MSMg01no181_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:52 2005CHROMAT_FILE: MSMg01no181_g13.g1 PHD_FILE: MSMg01no181_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGCAGGTCACCAATTTGGAAGTAGAGGTTGTGCAGAGGCCATATGGTGAA
GCGATGCTTTCTTTACCGGCTTGCCACCTCTGGCTTGCTTAACCTGCTTT
CTCACAGAAACCAGGACCACTAGCCCAGGGGTGGCTCCACCCACAATAGG
CTGGGTCTTCCCACTGCAATCACTAGTTAAGGAAATGGCCTACAGACTTG
TTTACAGCTGGATCTTAGGCTATACATTTTCGATTGAGGTCCCTTTCCCT
CAGATCACTGTAGCTTGTTACAAGTTGATGTAAAACTAGCCGGCACAATA
TGTGTTCTCTCTCTTTAAGAGAGGAACATAATTTTTGCATTTTTGTATTA
TCTAGCTTGCAAATATACCTTTATAGCTAGTTTATCTTTCTTCTTTTTTT
CAAGACAGGGTTTCTCTGTGTAGCTCCGGCTGTCCTGGAACTCACTCTGT
AGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAGA
TATTGGGATCAAAAGCATGCGTCACCACTGCTGGGCTGCTAGTTTATCTT
TTAACAGTACCTTTATTGTGGTGTGATTTCATCCATATAATACGTCGGCC
TGTACAACGTTCATAGTTACTAAATCGCTTACTCCCCTCTGATAGCCATA
CCTCGTTCCTGAGATTCACAAATTTCTTTCGGAATA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGAACTCA
GAAATCCACCTGCCTCTGCCTCCTGAGCGCTGGGATCAAAGGCGTGCACC
ACCGCCAGGCTTAAATTCTGATACTTGACAACAGGGAGGCAGAGCTAAAA
GTGAAAGCTAGAACAACTTCCAGTGTCCAGGCTCTTATGAAGCAACGCCT
CCTATTATTTGAAAAACTCACAATTGAAAACAAGGTCCAAATTCTTAAAT
CAGAAAATTTAAACGTTTATTGAAACCTCGGTAATTTGGCTGGGTGGTAT
TGACATATTTCTTTAACTCCCACCCCCGAAGCAGGTGGATCTGAGTTCAA
GGCCAGCCTCCCCCCTACAGTCACTCAAAAACTAACTACAACGAAACCAC
TGTTAACCTCCCTCCAAAGAAGTTTTATTTATAATCATAATGGAAATCAC
TGGTTAGCCCTTTACATGTTAAACTAAATGCCTTATGCCAACCACGAGAC
AGCCGCATGGATTCCCATTGTGGCTTCTTAAATATTTAATATCTCCTTGA
ACCCATACGTTTCTTAGCCCAATACCTTAACCTATTTCCCTAATTTCTTA
ATATCTTATCGTACAGCTCCTACTAAGTGCTTTTTCATGCATTATATTTT
CTCACCCCTTGACCCATTACTACTATTCTTACCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_g13.g1 MSMg01no181_g13.g1 CHROMAT_FILE:
MSMg01no181_g13.g1 PHD_FILE: MSMg01no181_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:52 2005
         (290 letters)



>mm_chr13_54733534_54734223
          Length = 690

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcctgagcgc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 578 actctgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcctgagcgc 519

                                                                       
Query: 61  tgggatcaaaggcgtgcaccaccgccaggcttaaattctgatacttgacaacagggaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgggatcaaaggcgtgcaccaccgccaggcttaaattctgatacttgacaacagggaggc 459

                                                                       
Query: 121 agagctaaaagtgaaagctagaacaacttccagtgtccaggctcttatgaagcaacgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agagctaaaagtgaaagctagaacaacttccagtgtccaggctcttatgaagcaacgcct 399

                                                                       
Query: 181 cctattatttgaaaaactcacaattgaaaacaaggtccaaattcttaaatcagaaaattt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 398 cctattatttgaaaaactcacaattgaaaacaaggtcccaattcttaaatcagaaaattt 339

                                                          
Query: 241 aaacgtttattgaaacctcggtaatttggctgggtggtattgacata 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaacgtttattgaaacctcggtaatttggctgggtggtattgacata 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)