Query= MSMg01no181_n22.b1 MSMg01no181_n22.b1 CHROMAT_FILE:
MSMg01no181_n22.b1 PHD_FILE: MSMg01no181_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:27 2005
(511 letters)
>mm_chr13_80936983_80937893
Length = 911
Score = 903 bits (467), Expect = 0.0
Identities = 500/511 (97%)
Strand = Plus / Plus
Query: 1 tcattttgatttcctgaaaagaaaaagtgatatgaaagtggaagcgaaatacaccctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tcattttgatttcctgaaaagaaaaagtgatatgaaagtggaagcgaaataaaccctttt 260
Query: 61 ctccccaagttacttttgaaaacggtgttcatctcagcaataagtaagtctaattaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccccaagttacttttgaaaacggtgttcatctcagcaataagtaagtctaattaaaac 320
Query: 121 aatggcattcactatgtaagtcctaaagttacaaaatcacctcttgtcatgaaacagatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatggcattcactatgtaagtcctaaagttacaaaatcacctcttgtcatgaaacagatc 380
Query: 181 acatagtggaaaaatactcaactgctggagtatgtagctcattggtagcatgcttaaata 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatagtgggaaaatactcaactgctggagtatgtagctcattggtagcatgcttaaata 440
Query: 241 gaatgcatgatagactaagcttagtcctgattaactatggcttgaacttgatcttctaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatgcatgatagactaagcttagtcctgattaactatggcttgaacttgatcttctaca 500
Query: 301 taagcacttgtcttgaataattagttccctgctgaggatgccatcccgaggaggtcctac 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 501 taagcacttgtcttgaataattagttccctgctgaggatgccattttgaggaggtcctgc 560
Query: 361 aaatgttgcaatgcggaatacaaatggcgaaataggtcactagtagtgggcctttgaatg 420
||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 561 aaatgttgcaatgtggaatacaaatggcaaaataggtcactcgtagtgggcctttgaatg 620
Query: 421 ttatatatgtgacatgtgattcctgcgtcaccatccatgtatcctggttcaccagaatag 480
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 ttatatgtgtgacatgtgattcctgcatcaccatccatgtatcctggttcaccagaatag 680
Query: 481 aatattctctgaacatgttgctgccaccatg 511
|||||||||||||||||||||||||||||||
Sbjct: 681 aatattctctgaacatgttgctgccaccatg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_n22.g1 MSMg01no181_n22.g1 CHROMAT_FILE:
MSMg01no181_n22.g1 PHD_FILE: MSMg01no181_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:27 2005
(677 letters)
>mm_chr13_81060345_81061421
Length = 1077
Score = 1158 bits (599), Expect = 0.0
Identities = 658/689 (95%), Gaps = 20/689 (2%)
Strand = Plus / Minus
Query: 5 gaattccaagggcagtatctctcttgttcagctgagaagcagtctccctgttcacactcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattccaagggcaggatctctcttgttcagctgagaagcagtctccctgttcacactcc 672
Query: 65 aggttagctgccttcaagctactgctgattgttcggttactgccattttacccgactaat 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aggttagctgccctcaagctactgctgattgttcggttactgccattttacccgactaat 612
Query: 125 ggggttacagatgcttggttctggggactgagttcagactgtcagc-cttgtgtggcaag 183
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 611 ggggttacagatgcttggttctggggactgagttcagactgtcagcact----tggcaag 556
Query: 184 tgcttccatttgctgagttgtctcccaagcccccctcgaggataatatcaattgaactac 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 555 tgcttccatttgctgagttgtctcccaagcccccctcgaggataatatcaactgaactac 496
Query: 244 aaaccgaggtaatacctgggtctctgagaaacagccagggaaatgggacgtgaccttgtc 303
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 495 aaaccgaggtaatacctgggtctctgagaaacagccagcgaaatgggaggtgaccttgtc 436
Query: 304 ccgacaaaacttatgatgaggaatggagagatggctcagaggttaagagcactgactgct 363
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccgacaaaacttacgatgagggctggagagatggctcagaggttaagagcactgactgct 376
Query: 364 cttccagagcccctgagttcaattcccagcaacg---------------acatggtggct 408
||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 375 cttccagaggtcctgagttcaattcccagcaacgacatgttgtggtcacacatggtggct 316
Query: 409 cacaaccatctgtaatgggatctgatgccctcttctgttgtgtctgaagagagcaacagt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cacaaccatctgtaatgggatctgatgccctcttctgttgtgtctgaagagagcaacagt 256
Query: 469 gtactcatataaatgaaataaataaatctttaaaaaaagaaagacttacaatgaactggc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtactcatataaatgaaataaataaatctttaaaaaaagaaagacttacaatgaactggc 196
Query: 529 agggagagataatatttaaaagaaaggagagggaaaccctagcctgagcaatacggtgca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agggagagataatatttaaaagaaaggagagggaaaccctagcctgagcaatacggtgca 136
Query: 589 tacccacccaagcaggatggaattccagattgtggtacgtaaagcgggacgataaaatca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tacccacccaagcaggatggaattccagattgtggtacgtaaagcgggacgataaaatca 76
Query: 649 tctgcagccagataggtcagggtgaacca 677
|||||||||||||||| ||||||||||||
Sbjct: 75 tctgcagccagataggccagggtgaacca 47
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
