Query= MSMg01no182_j04.b1 MSMg01no182_j04.b1 CHROMAT_FILE:
MSMg01no182_j04.b1 PHD_FILE: MSMg01no182_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:21 2005
(302 letters)
>mm_chr13_110216867_110217571
Length = 705
Score = 571 bits (295), Expect = e-167
Identities = 300/303 (99%), Gaps = 3/303 (0%)
Strand = Plus / Minus
Query: 1 cagactccaggtatataataaagttgaagacactaaagtggtcactgactgacacgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagactccaggtatataataaagttgaagacactaaagtggtcactgactgacacgtgct 444
Query: 61 caaagtg---ttttttttttttgtaaacaaagataataattataaaatgtgagtcttatt 117
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caaagtgtttttttttttttttgtaaacaaagataataattataaaatgtgagtcttatt 384
Query: 118 tgattttttccagaggacaaaaataaatttataattgccaaacaaaggttcattcttttt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgattttttccagaggacaaaaataaatttataattgccaaacaaaggttcattcttttt 324
Query: 178 ttctatctatttataatttttggaatggttctgtacaatagtttatttttgtacttaact 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttctatctatttataatttttggaatggttctgtacaatagtttatttttgtacttaact 264
Query: 238 tttcagcccttgtaaactctgcatgcattttaataggattgctattcttcaaggcttatt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttcagcccttgtaaactctgcatgcattttaataggattgctattcttcaaggcttatt 204
Query: 298 ata 300
|||
Sbjct: 203 ata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 705
Length adjustment: 9
Effective length of query: 293
Effective length of database: 696
Effective search space: 203928
Effective search space used: 203928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_j04.g1 MSMg01no182_j04.g1 CHROMAT_FILE:
MSMg01no182_j04.g1 PHD_FILE: MSMg01no182_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:21 2005
(135 letters)
>mm_chr13_110112184_110112715
Length = 532
Score = 215 bits (111), Expect = 1e-60
Identities = 126/131 (96%), Gaps = 3/131 (2%)
Strand = Plus / Plus
Query: 5 gaattctttctgatactcttcattaattttccatattcccaggattgctcaagtattgca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctgatactcttcattaattttccatattcccaggattgctcaagtattgca 264
Query: 65 actttggaaacattccaagtatagacctaactgcggctaaagcaattcgagcactattac 124
||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || ||
Sbjct: 265 actttggaaacattccaagtatagacctaactgtggctaaagcaat-cgagcaccat-ac 322
Query: 125 acggtctctag 135
||||||||||
Sbjct: 323 -cggtctctag 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 532
Length adjustment: 8
Effective length of query: 127
Effective length of database: 524
Effective search space: 66548
Effective search space used: 66548
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
