BAC Information

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BAC

Clone NameMSMg01-183I07
Chromosome13 (Build37)
Map Location 29,030,544 - 29,030,912
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik
Downstream geneSox4, LOC100041135, Cdkal1, E2f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183I07.T7 (MSMg01no183_i07.b1)MSMg01-183I07.TJ (MSMg01no183_i07.g1)
ACCAG376082AG376083
length733898
length of high quality
(start - end)
376 (42 - 417)41 (61 - 101)
definitionCHROMAT_FILE: MSMg01no183_i07.b1 PHD_FILE: MSMg01no183_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:33 2005CHROMAT_FILE: MSMg01no183_i07.g1 PHD_FILE: MSMg01no183_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGATCCGCGGAA
TTCCAGGACAGTCACCGCTACCCAGAGAAATCCTGTCTCGAAAAACCAAA
AACAACCACAACAACAACAAAAAAAACCCAAATGTGACTCTCTTCCTTAG
TCAATTTCAATTGCTTGGAGTGGAATGACACCCTCTCCCACCAAATTCCA
AAGTTTAACTTCTTCATTGTGTTTCTAGAAGGCAAGCAGGGGGGCAGGCA
GCACAGCTATCTCTCTACTTAATTCAATTCTGGCTGTCACTGTGGATTGA
GTAAACACCTCCTGGCCACTGATATGTGGTCTTCTCAAGTCACCTGTGTG
AGTCATTCTGATAGCTTCATTCTTTCGAAAGAAGGTTCCATATTGAATTC
TTTCTTGCCATTCTGACCCCTGCTTCCCATATTTCTCCTCCACAGCCTTC
CCGTGTGTCTCAGGTTTTTACTAATTTTGCTCTTGATCCACTGAGACTTG
TGTTGAACAGTCAAAGTCTGTCTACAACCTCCTCCCTGTCAGCTGACTTC
CCCTTCCCTAACACCTCATGCAGGACAATGCAGTTTCCCAAGCTTATGAC
TGGATCCATACAGCAGCACCCTCTTCTTGTATATTCTGATCTCTATTAAC
AGTTGACTTGCACCCCATCCCTTTTCCACCTCCTATTTTTTTGACGCCCC
CCATATATCCCATCTTTTCCCCCTGTTTTTTGN
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCTGGAATTCTATAGGGAATTGTATGGGGTGGGGGGTGN
CNCCCCCACCCCCTTCACCCCCCCCTCCCTTTCTTCCCCACAAAATTATA
TAATTATTATTAATTAATTACAACACAAACAATATAAAAGAAAAAACTTT
AAACACAATTTTATTTAATATCCTTCCTTACACCCCTCCACTCCCTGTTT
ATGACACCAACTAACTACGCATATAAAAATGAACTATCTCCCACATCAAT
ACACAACCCCTAAACCTCCACCCCTAATCCCACACACCTTTTTTTTTTTT
ACAACCACACAGACCACACAAATCCGTATGTTAACCACAATTTCTACTCA
ATCACACACCAACAAATATTATCATACACAAACACAATGACTCTACTTGT
AATGGGGTTGTCCACCCCCCGTGTTTGAAAAAAAAAAGAAACGAAGTTTG
GCGGTCGTTAGGTTGGGCACAACCGCCGCACTAGCTATACATATATGTAT
GCACTAAGCAAAAAGCTTATATATAATAATAATACATGTAATTATGATAC
ATCTCAAACATTCTCTAACATATGAAATGAATTGTGGTGCGCACCAAGCT
AACAAATCTTCTTTCACCGAGCAATCAAGATACAAACCAGATATAACAGA
TTAATATAACAACCATTAAAGTACTAACCGCGTGACGCTGCGGCGCGATC
AATTATATTATCCCATTCACCCTGCACCTAATAAACCACCACACATTTTG
TAAATATCACACACTTCATACTAAGAATTGATTGGACACGATGTTCTAGA
TATCCTCTCACATTCCCCTACCCCTGTATACTCCTGAAACAAATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_i07.b1 MSMg01no183_i07.b1 CHROMAT_FILE:
MSMg01no183_i07.b1 PHD_FILE: MSMg01no183_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:33 2005
         (376 letters)



>mm_chr13_29030338_29031113
          Length = 776

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccaggacagtcaccgctacccagagaaatcctgtctcgaaaaaccaaaaacaacc 66
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaggacagccagggctacccagagaaatcctgtctcgaaaaaccaaaaacaacc 266

                                                                       
Query: 67  acaacaacaacaaaaaaaacccaaatgtgactctcttccttagtcaatttcaattgcttg 126
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 accacaacaacaaaaaaaacccaaatgtgactctcttccttagtcaatttcaattgcttg 326

                                                                       
Query: 127 gagtggaatgacaccctctcccaccaaattccaaagtttaacttcttcattgtgtttcta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gagtggaatgacaccctctcccaccaaattccaaagtttaacttcttcattgtgtttcta 386

                                                                       
Query: 187 gaaggcaagcaggggggcaggcagcacagctatctctctacttaattcaattctggctgt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaaggcaagcaggggggcaggcagcacagctatctctctacttaattcaattctggctgt 446

                                                                       
Query: 247 cactgtggattgagtaaacacctcctggccactgatatgtggtcttctcaagtcacctgt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cactgtggattgagtaaacacctcctggccactgatatgtggtcttctcaagtcacctgt 506

                                                                       
Query: 307 gtgagtcattctgatagcttcattctttcgaaagaaggttccatattgaattctttcttg 366
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgagtcattctgagagcttcattctttcgaaagaaggttccatattgaattctttcttg 566

                    
Query: 367 ccattctga 375
           |||||||||
Sbjct: 567 ccattctga 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)