BAC Information

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BAC

Clone NameMSMg01-183J08
Chromosome13 (Build37)
Map Location 103,239,332 - 103,239,613
singlet/doubletsinglet
Overlap genenone
Upstream genePik3r1
Downstream geneCd180, Mast4, EG621312, EG432800, LOC432801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183J08.T7 (MSMg01no183_j08.b1)MSMg01-183J08.TJ (MSMg01no183_j08.g1)
ACCAG376128AG376129
length719760
length of high quality
(start - end)		597 (45 - 641)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no183_j08.b1 PHD_FILE: MSMg01no183_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:38 2005CHROMAT_FILE: MSMg01no183_j08.g1 PHD_FILE: MSMg01no183_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATCAATCCTATCAAGTTTGGTACTTCCTTGTTGAAAGCTTATT
AACTATTGATTCAATTTATTTTAATAAGTATTGTCCTATAAAAATGATCT
ATTTCTTCAGATCTAAGTTTTGGTGCTTTTTTAAACTCAAGAAATTGATC
CATTTCGTCTAGATTATTAAATTTGTTGTTATAGAATCATTTGTAATATT
CTTCCATTGTCTTTTAATGTCTGTATAATCAATCCTTATTACACTCCTTT
CATGTCTGATATAGGAGTTTATGTTTTATATCTAAGCTCGCTTGCCTAGG
AGCTTATCAACATTATTGATCTTTTGAAAGAACCAGCTTTGGTTTGGTTT
ATTTTCCCTATTGACTTGTTATTCTGAATTGATTTCCACTCTAATTTTAA
TTATTTCTTTTTTCCCATGAATACATCAAATTTAATTCAATCTTTTCCTA
GTTTTTTTTTTAAATAGAAACCTAGACATCTGATTTTTTGATCCTTATCT
TTCTCTGATTTGCTAACTTCATGCTAGTAACTCTCCTCTGAGTACTGTCT
TCAATGTACCGTGTGCATGATAAGCAGTATTTTAATTTTCTTTTACATCA
AAGCATTTTTAATCTCCCTTAAGACATCACTGATGTTTGCATTAGATGTG
TATTGCCTACTCCTCAAAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAGAACAGGTTCTCCAGGCAG
CTACTGTTAATCTGATGGAGTTTGCACAGAAGATAGAACTTGTTTTCCTT
CCTATGGCACAAAGTGTTTGGTCGATGAAGATGTCTTCCCCCCCTCACTT
CTAAGTATGTTCAATTATGCCTGTTGGCTCAGTTTCCATACTGCCCCAGT
CTTCTGGCTTCGCGTTGGTTCTAATGCTAGAACACTCTTAATGCCTGCCT
TATCCCTTGTGTTCTAAAATGGCTTCAGGAAACTAGGATGTGACTTACTG
AGAGGTGATTGTTTAGGCCCCTCCCCCGCTGTGTTTCCTTGGGCAACTTT
CTTACTGTGACTACCTTTTCATGAACTAAAATGAAGAACAGAGGCAAGAA
AAAAAGGAATGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGC
CTCTTCCCCCCCATTTTTTTCTACATTCCACATTGTACCTATAAATTTAT
CCATTTACCCCGAGGAGCCCCATTTACCCATTTTCTTCCGTCATTAATTA
CTCCTTCTTTACTAAGCACTTTTACAATTTAACCCGGTCCCCCCTTTGAG
CGCCTCTACTTCTCTTCCCCTCCTCTTCTTGTATTTTATCTCTTTATAAC
ACCTCCCCCTCCGTTACCCACTTATTTTTTTTTCCTATTTTTGAGTTATG
TTCTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_j08.g1 MSMg01no183_j08.g1 CHROMAT_FILE:
MSMg01no183_j08.g1 PHD_FILE: MSMg01no183_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:38 2005
         (283 letters)



>mm_chr13_103239056_103239738
          Length = 683

 Score =  514 bits (266), Expect = e-150
 Identities = 278/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagagaacaggttctccaggcagctactgttaatctgatggagtttgcacagaagatag 60
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 558 aaagagaacacgttctccaggcagctactgttaacctgatggagtttgcacagaagatag 499

                                                                       
Query: 61  aacttgttttccttcctatggcacaaagtgtttggtcgatgaagatgtcttccccccctc 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 498 aacttgttttccttcctatggcacaacgtgtttggtcgatgaagatgtcttccccccctc 439

                                                                       
Query: 121 acttctaagtatgttcaattatgcctgttggctcagtttccatactgccccagtcttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 acttctaagtatgttcaattatgcctgttggctcagtttccatactgccccagtcttctg 379

                                                                       
Query: 181 gcttcgcgttggttctaatgctagaacactcttaatgcctgccttatcccttgtgttcta 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcttcgagttggttctaatgctagaacactcttaatgcctgccttatcccttgtgttcta 319

                                                     
Query: 241 aaatggcttcaggaaactaggatgtgacttactgagaggtga 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaatggcttcaggaaactaggatgtgacttactgagaggtga 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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