BAC Information

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BAC

Clone NameMSMg01-184N15
Chromosome13 (Build37)
Map Location 30,074,139 - 30,240,018
singlet/doubletdoublet
Overlap geneE2f3, Mboat1
Upstream geneLOC100041135, Cdkal1
Downstream geneAgtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184N15.T7 (MSMg01no184_n15.b1)MSMg01-184N15.TJ (MSMg01no184_n15.g1)
ACCAG377012AG377013
length713736
length of high quality
(start - end)		310 (62 - 371)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no184_n15.b1 PHD_FILE: MSMg01no184_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:24 2005CHROMAT_FILE: MSMg01no184_n15.g1 PHD_FILE: MSMg01no184_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,074,139 - 30,074,444)(30,239,748 - 30,240,018)
sequence
TATATTCNNNCCAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCCCCACCTCTTCTTGAACATAGGATGTTTA
GTCTTATCTTAGTTCATTCCATATGCCTTCTCAATCTTCATGCTTAGGGG
AAAATATCAACAGAATTCTAAAACACAGGGCCATGCATGTTTTAAATCTC
AGAACTTGGGCACTTGAGGCAAGAAGACCAGGGGTTCAAGGCTATAAAAG
ACCCTGCCTCAAAAACAAAATCAAATAAATTCCAAGACTTAACTGGAAGC
CTTCGGAAACACTGACAAGAAAAACATAATAAACAAATCAAGCATTGCCT
GCAACGCTTAGGACTTTGTATGTTTTTGTGACCACCCCCTCCATACCCCT
CCCACAAGATACAGCTCGGGAAGCATAGATCAACAAGTGATTCAGCATAC
ATTACAATCTTACATAAAACTACTTCGGAATATGTGTAAGAGGCATTTAG
ATTCCTATAATGAAACATTATTTTTGAGTATACAAATTCAATCTATATTC
CTGGAATAATAACTTCATGGCTAGAAGGACAATAAAAGTTTAGAAATAAC
ATGGAAGGTGGTGAGGGCAATAATTTTATACTTCAAGTACTTAACTACAG
TAAACTACATATAAATTTGGTTAGACAGTCTTGGGTGAGCTGGTCCAATG
AATAATCTAAGAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAGCAAGTACGGTGGTCAGTAGG
CTAGCTATAGGCAGAGCAGTTTTCAGTCCAACACACAGAAGTCCTTACAC
AGATGTCTCGCTGCTCCCATCTAGCTGAGGGGAAAATGAAAACAACCTCT
CCTCTCATAGCTCCCGCATGAAGGGGTGATCGGGAACTCTTCATATTCCT
AGGTTAGGTGCTAAGAGACCTTGACCCAGCCCTCTTACGCCCCAAACAAG
AGCAGGTCAATAAGTATATGTACAAAAGGCCACGGCTGTTCCTGAAAGAC
TAGAAATGGTTTAGAAAGCGCCCCCAAGGAGGTCAGGTATCTTCAAAGCT
CCTCGTGCTGATATGAACCAGCTTCTAAGAAACAGGGTAAGAATGGAGGA
GTACAAAATAGAAGTAGAGAGAAAAAGCAAACTGAAGAAAGGTAGGCCGT
CACGTGGGCACGGTCGCGTGGGCGCGGTCTAGTGGGCGCGGTCACGTGGG
CAGAAAGCAGACAAAAGAGACCATCCTGGGTACAAGTAGACACAGTCAAC
CCCTAGAAGAAGATGCAGGAGAAAGAGCTGTCTAGGAGAAGAGCCAGTAC
AAAGACTGGCCTCCATTATCCATCCTTCTCTGTCTACCCATGCATTTAAT
ACCAAGAGTATATGCTACCAGTGTAAAGGCTAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_n15.b1 MSMg01no184_n15.b1 CHROMAT_FILE:
MSMg01no184_n15.b1 PHD_FILE: MSMg01no184_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:24 2005
         (310 letters)



>mm_chr13_30073935_30074644
          Length = 710

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccccacctcttcttgaacataggatgtttagtcttatcttagttcattccatatg 64
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccacctcttcttgaacatagaatgtttagtcttatcttagttcattccatatg 264

                                                                       
Query: 65  ccttctcaatcttcatgcttaggggaaaatatcaacagaattctaaaacacagggccatg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 ccttctcaatcttcatgcttaggggaaaatatcaacagaattctaaaacacagggctatg 324

                                                                       
Query: 125 catgttttaaatctcagaacttgggcacttgaggcaagaagaccaggggttcaaggctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgttttaaatctcagaacttgggcacttgaggcaagaagaccaggggttcaaggctat 384

                                                                       
Query: 185 aaaagaccctgcctcaaaaacaaaatcaaataaattccaagacttaactggaagccttcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaagaccctgcctcaaaaacaaaatcaaataaattccaagacttaactggaagccttcg 444

                                                                       
Query: 245 gaaacactgacaagaaaaacataataaacaaatcaagcattgcctgcaacgcttaggact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaacactgacaagaaaaacataataaacaaatcaagcattgcctgcaacgcttaggact 504

                 
Query: 305 ttgtat 310
           ||||||
Sbjct: 505 ttgtat 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no184_n15.g1 MSMg01no184_n15.g1 CHROMAT_FILE:
MSMg01no184_n15.g1 PHD_FILE: MSMg01no184_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:24 2005
         (283 letters)



>mm_chr13_30239548_30240230
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 269/271 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagcaagtacggtggtcagtaggctagctataggcagagcagttttcagtccaacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taagcaagtacggtggtcagtaggctagctataggcagagcagttttcagtccaacacac 412

                                                                       
Query: 61  agaagtccttacacagatgtctcgctgctcccatctagctgaggggaaaatgaaaacaac 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agaagttcttacacagatgtctcgctgctcccatctagctgaggggaaaatgaaaacaac 352

                                                                       
Query: 121 ctctcctctcatagctcccgcatgaaggggtgatcgggaactcttcatattcctaggtta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 351 ctctcctctcatagctcccgcatgaaggggtgatcgggaactcttcatattcctgggtta 292

                                                                       
Query: 181 ggtgctaagagaccttgacccagccctcttacgccccaaacaagagcaggtcaataagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggtgctaagagaccttgacccagccctcttacgccccaaacaagagcaggtcaataagta 232

                                          
Query: 241 tatgtacaaaaggccacggctgttcctgaaa 271
           |||||||||||||||||||||||||||||||
Sbjct: 231 tatgtacaaaaggccacggctgttcctgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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