Query= MSMg01no187_m24.b1 MSMg01no187_m24.b1 CHROMAT_FILE:
MSMg01no187_m24.b1 PHD_FILE: MSMg01no187_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:14 2005
(318 letters)
>mm_chr13_32135182_32135898
Length = 717
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%), Gaps = 1/313 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcgaatttcaaggcatgaagcataaatgccagtgactaaaggtcatcattgct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcgaatttcaaggcatgaagcataaatgccagtgactaaaggtcatcattgct 264
Query: 65 ttcttcccgtttaaaaaaagaaagaaagaaaaagacaaaggaaaaagaaaagaaaggggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcttcccgtttaaaaaaagaaagaaagaaaaagacaaaggaaaaagaaaagaaaggggg 324
Query: 125 aaagtatctctagattcagaaagaaattggctggctggctgactagaagatgtcttgcct 184
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 aaagtatctctagattcagaaagaaattggctg-ctggctgactagaagatgtcttgcct 383
Query: 185 tccctcaaatccccaacttactgatttgccctctttcatatattacactttaaacccatt 244
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 384 tccctcaaatccccaacttactgatttgccctcttttgtatattacagtttaaacccatt 443
Query: 245 acaccagtttgaaggataagtgaaccaagggtctcataaacacactctccttcttagctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaccagtttgaaggataagtgaaccaagggtctcataaacacactctccttcttagctt 503
Query: 305 catatctgaaaaa 317
|||||||||||||
Sbjct: 504 catatctgaaaaa 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 717
Length adjustment: 9
Effective length of query: 309
Effective length of database: 708
Effective search space: 218772
Effective search space used: 218772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_m24.g1 MSMg01no187_m24.g1 CHROMAT_FILE:
MSMg01no187_m24.g1 PHD_FILE: MSMg01no187_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:14 2005
(606 letters)
>mm_chr13_32281437_32282442
Length = 1006
Score = 897 bits (464), Expect = 0.0
Identities = 485/494 (98%), Gaps = 4/494 (0%)
Strand = Plus / Minus
Query: 113 agaatccattaattctatttctagagcttagttttgagatcatgtgcctttccttccatg 172
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1006 agaatccattaattctatttctagagcctagttttgagatcatgtgcctttccttccatg 947
Query: 173 gtagcgctagctattgatgctgtctataaacaaactaaaagtggtttttgttggtatatt 232
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 946 gtagcgttagctattgatgctgtctataaacaaactaaaagtggtttctgttggtatatt 887
Query: 233 tgattactgtcctggtcttagctcaatctcttcttatattaaattgttatatatatatat 292
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 886 tgattactgtcctggtcttagctcaatctcttcttatattaaattgt----tatatatat 831
Query: 293 cctaatatatataaatatatatatcatgaacttgcttttcaaaaatatttgatagtagat 352
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 cttaatatatataaatatatatatcatgaacttgcttttcaaaaatatttgatagtagat 771
Query: 353 agattacatttgtaatttcatgctatttattttatattttgaacaacagcttctactctg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 agattacatttgtaatttcatgctatttattttatattttgaacaacagcttctactctg 711
Query: 413 agaaaccactcataagcttcctagattgccaaaatgtcatatgaacaaattgtcagctag 472
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 agaaaccactcataggcttcctagattgccaaaatgtcatatgaacaaattgtcagctag 651
Query: 473 cagctggagaacaagtttagcagagaatacgtttcaaatgtgtaagtgtggtggcttagg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cagctggagaacaagtttagcagagaatacgtttcaaatgtgtaagtgtggtggcttagg 591
Query: 533 atagacctttcttccctttcctccctttgtttttattctgcccctcccaatttgggtttc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atagacctttcttccctttcctccctttgtttttattctgcccctcccaatttgggtttc 531
Query: 593 ttttaaacttttct 606
||||||||||||||
Sbjct: 530 ttttaaacttttct 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
