Query= MSMg01no187_p21.b1 MSMg01no187_p21.b1 CHROMAT_FILE:
MSMg01no187_p21.b1 PHD_FILE: MSMg01no187_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:28 2005
(320 letters)
>mm_chr13_58341093_58341812
Length = 720
Score = 590 bits (305), Expect = e-173
Identities = 314/317 (99%)
Strand = Plus / Minus
Query: 4 ggaattcagaatgggtttccagatcccctggagagaaagttacaagtttttgtgaactac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ggaattcagaatgggtttccagatcccctggagagaaagttacaagtttttgtgaactac 600
Query: 64 ctcataggggtgctggatccaaaatagggtcctctgaaagagcagcaagtgttcttgatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctcataggggtgctggatccaaaatagggtcctctgaaagagcagcaagtgttcttgatg 540
Query: 124 tgagctagctctccagcccttacagttgactctaaccacaaacttatgaagcattctctt 183
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgagctagctctccagaccttacagttgactctaaccacaaacttatgaagcattctctt 480
Query: 184 gctattccccaagcatcgtttgtctcctacctaatgttagcacactgattcctcactgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gctattccccaagcatcgtttgtctcctacctaatgttagcacactgattcctcactgtg 420
Query: 244 ctgtgtcaggcttctggggttggtgtattcgttcatgcgtgcatgagtatgtgtggcagc 303
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 419 ctgtgtcaggcttctggggttggtgcattcgttcatgcgtgcgtgagtatgtgtggcagc 360
Query: 304 tctacttcatctgtttc 320
|||||||||||||||||
Sbjct: 359 tctacttcatctgtttc 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no187_p21.g1 MSMg01no187_p21.g1 CHROMAT_FILE:
MSMg01no187_p21.g1 PHD_FILE: MSMg01no187_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:29 2005
(512 letters)
>mm_chr13_58191180_58192090
Length = 911
Score = 930 bits (481), Expect = 0.0
Identities = 503/511 (98%), Gaps = 4/511 (0%)
Strand = Plus / Plus
Query: 1 aaatctaccctgtactacaagagtcaaaaactcaaacaaaaggactggaagccgtcttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 200 aaatctaccctgtactacaagagtcaaaaactcaaacaaaaggactggaaggtgtcttag 259
Query: 61 ttcatcaggggtcttagaagcaggccctcaatatccagaacccacgttaaaaaaaaaaa- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttcatcaggggtcttagaagcaggccctcaatatccagaacccacgttaaaaaaaaaaaa 319
Query: 120 -gttaggtgtgaggacacacttgtctttcaggcaaactgctggggcccgtaggccatctg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agttaggtgtgaggacacacttgtctttcaggcaaactgctggggcccgtaggccatctg 379
Query: 179 gcctagcctaccaggtgattcaagtcactcagagaccctgtctcaaaacaatggaacgac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcctagcctaccaggtgattcaagtcactcagagaccctgtctcaaaacaatggaacgac 439
Query: 239 acccaagtaataacactaacttttggttctaaatgcacacacgtgcatatgcatgtgcac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acccaagtaataacactaacttttggttctaaatgcacacacgtgcatatgcatgtgcac 499
Query: 299 cttgcacatgtgcatgcacacacacatacacaacatgcaacacatgcccgcacaaataat 358
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 cttacacatgtgcatgcacacacacatacacaacatgcaacacatgcctgcacaaataat 559
Query: 359 aataatttttttttaaagaaggcctagaactgcttgtagctgcaaggttggcagtgaaaa 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aataatttttttt-aaagaaggcctagaactgcttgtagctgcaaggttggcagtgaaaa 618
Query: 419 ccaacaaggggccaggggtctactcaataaaataatgcatgtttatcaaacacaagcaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccaacaaggggccaggggtctactcaataaaataatgcatgtttatcaaacacaagcaag 678
Query: 479 cttcaggagagagaggggggagtggaggagg 509
|||||||||||||||||||||| ||||||||
Sbjct: 679 cttcaggagagagaggggggag-ggaggagg 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
