Query= MSMg01no188_b14.b1 MSMg01no188_b14.b1 CHROMAT_FILE:
MSMg01no188_b14.b1 PHD_FILE: MSMg01no188_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:38 2005
(318 letters)
>mm_chr13_34164823_34165540
Length = 718
Score = 543 bits (281), Expect = e-159
Identities = 308/319 (96%), Gaps = 5/319 (1%)
Strand = Plus / Plus
Query: 5 gaattcctatttggctttagcactatcactatacagatacctccccctcc----ccccct 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 200 gaattcctatttggctttagcactatcactatacagatacctccccctccccctccccct 259
Query: 61 ccccctccccct-cccccgccacgcccaccacaaaaagaactcacctgtgcaagtcagtg 119
|||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct: 260 ccccctccccctccccccaccactcccaccacaaaaagaactgacctgtgcaagtcagtg 319
Query: 120 aatcctgaccttctcttatttttgccatcttctttttgaagaattagggttacagccaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatcctgaccttctcttatttttgccatcttctttttgaagaattagggttacagccaat 379
Query: 180 cattatcacccctgttattctttagtcattttctcagtaatcttttaaaaaatcaagttg 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 cattatcacccctgttattctttagtcattttctcagtagtcttttaaaaaatcaagttg 439
Query: 240 gttaaaaatggactcttaaagtaattaccaggtcactatctctatcattttccagtcaaa 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 gttaaaaatggactcttaaagtaattaccaggtcactatctccatcattttccagtcaaa 499
Query: 300 ccatttatgtacctgatgt 318
|||||||||| ||||||||
Sbjct: 500 ccatttatgtccctgatgt 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no188_b14.g1 MSMg01no188_b14.g1 CHROMAT_FILE:
MSMg01no188_b14.g1 PHD_FILE: MSMg01no188_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:38 2005
(522 letters)
>mm_chr13_34284763_34285684
Length = 922
Score = 924 bits (478), Expect = 0.0
Identities = 493/498 (98%)
Strand = Plus / Minus
Query: 1 cactgcccaggcagccagcaccaactcagacttaaaaggaagttcacatagaaacaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cactgcccaggcagccagcaccaactcagacttaaaaggaagttcacatagaaacaattc 639
Query: 61 atgtgggaacactcggcagccaccctatacctcacaagccttcttcctctttcccactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atgtgggaacactcggcagccaccctatacctcacaagccttcttcctctttcccactct 579
Query: 121 cgttaccctgtgtatgtgggtgcgtccatcccatcgcggctccagtgatcggcaaataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cgttaccctgtgtatgtgggtgcgtccatcccatcgcggctccagtgatcggcaaataca 519
Query: 181 gccagcatccagactcaggtgagtactgaacattctccctgggcttccttggcttctatt 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 518 gccagcatccagactcaggtgagtactgaagattctccctgggcttccttggcttctatt 459
Query: 241 acgtccgcacaagagttgccacaaggactcaccaaccggtttctgtttcttctctccctt 300
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 458 acgtccgcacaagagttgccacaaggactcaccaatcggtttctgtttcctctctccctt 399
Query: 301 ccattctttgcccttcaagaattgcagctgaagttggccgtaggctggacactataagca 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 398 ccattctttgcccttcaagaattgcagctgaagttggccgtaggttggacactataagca 339
Query: 361 tatatttgtattctctatccccatcttgtgctagaggaagccactctagtctccctggtt 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 338 tatatttgtattctctatccccatcttgtgctagaggaagccactcttgtctccctggtt 279
Query: 421 gtgcgcagcttggcttgcatgccctcccagcccccgatccagcaccagtgcttttgtcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gtgcgcagcttggcttgcatgccctcccagcccccgatccagcaccagtgcttttgtcct 219
Query: 481 tggtcagcagctagtcag 498
||||||||||||||||||
Sbjct: 218 tggtcagcagctagtcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
