BAC Information

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BAC

Clone NameMSMg01-188B24
Chromosome13 (Build37)
Map Location 19,166,708 - 19,167,028
singlet/doubletsinglet
Overlap geneAmph
Upstream gene4930448F12Rik, Pou6f2, Vps41
Downstream geneLOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188B24.T7 (MSMg01no188_b24.b1)MSMg01-188B24.TJ (MSMg01no188_b24.g1)
ACCAG379245AG379246
length740742
length of high quality
(start - end)		320 (45 - 364)304 (77 - 380)
definitionCHROMAT_FILE: MSMg01no188_b24.b1 PHD_FILE: MSMg01no188_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:40 2005CHROMAT_FILE: MSMg01no188_b24.g1 PHD_FILE: MSMg01no188_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:03:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATTTGATTCTGTAAATCTCCTAATCTGTAGATTAGGGATGGGAA
ACCTGACTTCTCTGGAAGGACAATCCCATCTTTTTCCGTTGTTGAAGCAG
CCATTATCTTTTAACCATCTGCTTTATCCTTAACATTTCCACTTTGTTTT
CTTTGCTGGATTTCTTCAAATTCCAACAATGCTTTTCTGCTTAGCAGCTC
CACTGAATCTTTTGTTATTGTGTGTCAGCCTTCTCTACCTGTCAGCCCTC
AGTGTACTCTGTGACTCATTTAGTTGGGCATTTTGGTTCACATCCCAGTG
ATGTCAAACTATTGTTTTGTCTCCCCACCCAAACGGTTCTAACTTTTGGA
AATGCAAAAATTTAGCTGCATTGCATGATTTTCTCTCTCTGGGACCCAAG
GCAAGCAAGCAGCTCTCCCACCCCCACCCGACATGCTACACTGTGGATTT
GAAAGCAAAGCAAAGACACGTAAGGGCTGTACTGGCTCCCACCTAAGTGC
TTCATGCCACTTCTAATCACATTCCACAACCCAAGAGAAGTTCTATAGCC
AAGACTGATATTTTAAACTGGAAGTCCTATTCCTATCACAGTAATTCTGA
GAGATTGGAAATAATATAATCTTCCAAATTCATATTTTGCACCTTTCATA
TATAATACTTTTTTCCTGAGGATAATACAGACCAAATTTT

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCAATTT
TTAATAGGGTTATTTGGTTCTCTGGAGTCCAACTTTCTTGAGTATATATA
TTAGTCCCCTATCAGATTTAGAATTGGTAAAGATCTTTTCCCAATCTGTT
GGTGGCCTTTTTGTTTTATTGACAGTGTCCTTTGCCTTATAGAAGCTTTG
CAATTTTATGAGGTCCCATTTGTCAAGTCTCGATCTTACAGCACAAGCCA
TTGCTATTCTGTTCAGGAGTTTTCCCCCGTCCCTATATCTTCAAGGCTAT
TTATGAACTTCTTAAAGCCTTCTATCATCACCATGACATATGATTCTAAT
TCTGAATCTTGCCTATTCACTGCGCCGGGGGTATCTAGGACTTGCTGTGT
GGGAGAACTGGGTTCTGGTGATGCAAAGTAGCCTTGGTTTCTGTTGGCAA
GGTTGCCTCTTGCCATCTGGTCATCTGTGGTGTTAATTGCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTGTTGTCCTTCCTGTGCNTCTTGCAACCTGTGATTTGAGGTGTGTC
AGTTCTTCTGGGTTGACCAGCTCTCTTCTGTTTTAACTTGTGGGTGTCAG
ACTGTGAAACAGCCCACTTTCTTGTTCCTGCTTTTTAAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_b24.b1 MSMg01no188_b24.b1 CHROMAT_FILE:
MSMg01no188_b24.b1 PHD_FILE: MSMg01no188_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:03:40 2005
         (320 letters)



>mm_chr13_19166504_19167228
          Length = 725

 Score =  513 bits (265), Expect = e-150
 Identities = 306/323 (94%), Gaps = 9/323 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatttgattctgtaaatctcctaatct---gtagattagggatgggaaacctg 61
           ||||||||||||||||||||||||||||||||||   |  |||||||||||||||||| |
Sbjct: 205 gaattcagatttgattctgtaaatctcctaatctctgg--gattagggatgggaaaccgg 262

                                                                       
Query: 62  acttctctggaaggacaatcccatctttttccgttgttgaagcagccattatcttttaac 121
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acttctctgtaaggacaatcccatctttttccgttgttgaagcagccattatcttttaac 322

                                                                       
Query: 122 catctgctttatccttaacatttccactttgttttctttgctggatttcttcaaattcca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catctgctttatccttaacatttccactttgttttctttgctggatttcttcaaattcca 382

                                                                       
Query: 182 acaatgcttttctgcttagcagctccactgaatcttttgttatt--gtgtgtcagccttc 239
           |||||||||||||||||||||||||||||| |||||||||||||  ||||||| ||||||
Sbjct: 383 acaatgcttttctgcttagcagctccactggatcttttgttattttgtgtgtctgccttc 442

                                                                       
Query: 240 tctacctgtcagccctc--agtgtactctgtgactcatttagttgggcattttggttcac 297
           ||||||||||| |||||  ||||||||||||||||||||||||||||||||||||  |||
Sbjct: 443 tctacctgtcaaccctctcagtgtactctgtgactcatttagttgggcattttggcccac 502

                                  
Query: 298 atcccagtgatgtcaaactattg 320
           |||||| ||||||||||||||||
Sbjct: 503 atcccactgatgtcaaactattg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 725
Length adjustment: 9
Effective length of query: 311
Effective length of database: 716
Effective search space:   222676
Effective search space used:   222676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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