BAC Information

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BAC

Clone NameMSMg01-188F20
Chromosome13 (Build37)
Map Location 79,313,474 - 79,313,787
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188F20.T7 (MSMg01no188_f20.b1)MSMg01-188F20.TJ (MSMg01no188_f20.g1)
ACCAG379405AG379406
length731746
length of high quality
(start - end)
320 (46 - 365)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no188_f20.b1 PHD_FILE: MSMg01no188_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:00 2005CHROMAT_FILE: MSMg01no188_f20.g1 PHD_FILE: MSMg01no188_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAGTAAATAGACACATGCTTAATTTGAAATTTTCTTAAATATC
TTCCAGGAAAATTCAACAATGTAGTATTAAAGAACAGCTTTATCAATATG
TTTTTAAAGATACATGAAACACTGTCCAGAATGAGTTCAGAGTCAGTTCT
ACAATTAGTGGGGTCAAAAAGAAAAATGGCATTTTACAGAGTATCCCTGG
TTTCTGCCAAACTCAACTCACTTGGCTATGAATTTGAGATTTTAGCTAGT
AATATTTTAAAAGACTTAATTACTTATTATTTGTTTTATATGTGTGTACA
CTAGCTTAAGTATATTATTACCGCGCCCCGCGTGAGGGCCTTTAGAGACC
AGCAGGAAGTATCTGACCACCCGCAAGTTGAAATACAGGGGGTTGTGAGC
CATGTTATCTGGGTACCAAGAAGGAACATGACTTCTCTGCAAGAGATCTT
GACCATTATGTCTATCCAGAGAGAATCAGAAGATTGTATTGTCTGAATAC
TACCGTGAACTTGGCCTTCAAAAGATTGAAGGATTGTTTGTTTCTCTCAA
TAAAAGCGGTGCCCTTGCTGACTTTAATCTTTTGAGACATTATAACCCTA
ACTAGTGCTATTAGCCTGATTAAAAACTATTTTGTTGCATCCTATTATTT
GACCCCTATATTTACCAATCTTTATTTTCTG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTGTGACCTAGTATGTGATCAGTT
TTGGAGAAACCTCTGTGAGGTGCTGAGAAGATATATTATTTTTTGTTTCA
GTAGATATTAGTTAGGTCCATAATGCTTGTTAGCTCTACTATTTCCTTGT
TTAGCTCCTGTCTGGATGACCTGTGCATTGGAAAGAGAGAGGTAATCAAG
TCTCTCACTATCATAGTGTGGGATTCAATGTTTGATTTCACATTTAGTAA
TATTTCCTTTACAAGTGTGGGTGTCTTTGCATTTGGGGTATAAATGCTCT
AAATTGGGACTTATTTTTTGTGCCCCCCCCCCCCAATGAACATCGAGTGT
CCTTTTCCATCTCTTGCCCCCCCCCAAAAAAAAGAAACTATCGTGTTGCA
CGTAAGGATGGCCAAACAAGCTTGCTTCATAGGTTCATTTGCTTGGAAAA
ATACCTTTGTTTTTACGGAAGACATCATTTTTAGTTTTACGAAAAATTTC
TTCTTTGTTCGGCTTCCTTGAACATACTCTTTGTTTCTCACTTTACGTGT
ACTTCCTTGTTATTTCTCCTCATTTTGCCTTCATTTTTTTTTGTCTCGTT
TATATCATTTCTTTTCCTTTCCCACCTTATTTTTTTACACTCATCTTTTC
CCTCTTTCTCTTACACCTCCTTATTCTTTCCCTTCTTTATTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_f20.b1 MSMg01no188_f20.b1 CHROMAT_FILE:
MSMg01no188_f20.b1 PHD_FILE: MSMg01no188_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:00 2005
         (320 letters)



>mm_chr13_79313270_79313987
          Length = 718

 Score =  545 bits (282), Expect = e-159
 Identities = 307/316 (97%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctagtaaatagacacatgcttaatttgaaattttcttaaatatcttccaggaa 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 518 gaattctctagtaaatagacacatgcataatttgaaattttcttaaatatcttccaggaa 459

                                                                       
Query: 65  aattcaacaatgtagtattaaagaacagctttatcaatatgtttttaaagatacatgaaa 124
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aactcaacaatgtagtatcaaagaacagctttatcaatatgtttttaaagatacatgaaa 399

                                                                       
Query: 125 cactgtccagaatgagttcagagtcagttctacaattagtggggtcaaaaagaaaaatgg 184
           |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 398 cactgtccagaatgagttcagagtcagttctacaatcagtgggatcaaaaagaaaaatgg 339

                                                                       
Query: 185 cattttacagagtatccctggtttctgccaaactcaactcacttggctatgaatttgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 338 cattttacagagtatccctggtttctgccaaactcaactcacttggctatgaacttgaga 279

                                                                       
Query: 245 ttttagctagtaatattttaaaagacttaattacttattatttgttttatatgtgtgtac 304
           |||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||
Sbjct: 278 ttttagctagtaatattttaa--gacttatttacttattatttgttttatatgtgtgtac 221

                           
Query: 305 actagcttaagtatat 320
           ||||||||||||||||
Sbjct: 220 actagcttaagtatat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 718
Length adjustment: 9
Effective length of query: 311
Effective length of database: 709
Effective search space:   220499
Effective search space used:   220499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)