BAC Information

Click to search

BAC

Clone NameMSMg01-188J01
Chromosome13 (Build37)
Map Location 87,432,141 - 87,432,439
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188J01.T7 (MSMg01no188_j01.b1)MSMg01-188J01.TJ (MSMg01no188_j01.g1)
ACCAG379548AG379549
length717751
length of high quality
(start - end)
321 (65 - 385)300 (76 - 375)
definitionCHROMAT_FILE: MSMg01no188_j01.b1 PHD_FILE: MSMg01no188_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:15 2005CHROMAT_FILE: MSMg01no188_j01.g1 PHD_FILE: MSMg01no188_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCGCTTNNNNNNTAAAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCGCGGAATTCCTTCCAACATATAATAATCAGAACAA
CAAATGTACTAAATAAGGATGGAATATTAAAAGCAGTAAGAGGAAAAGGT
CAAGTAACATATAAAGGCAGACCTTTCAAAATTATACCAGACTTCTCACC
AGAGACTATGAAAGCCAAAAGATCCTGGACAGATGTTATACAGATCCTAA
GAGAACAAAAATGTCAGCCCAGGCTACTATACCCAGCAAAACACTCAATT
ACTATTGGTAGAGAAACCAAGTATTCCATGACAAAACCAAATTGAAACAA
TAACATTCCATGAATCAAGGTCTTCAAAGGATATTGTTTTGACCCACTCC
CCACATGGAGAGAAATCATGCCCTAGAAAAAGCAAGAAAGTAATCCTTCA
ACAAACCTAAAAGAAGATACCCTTAAGAACAGAATCCCAACTCTAACAAC
AAAAATAACAGGAAGTAACGATTACTTTTCCTTAATATCTCTTAATATCA
ATGGATTCAATTCCCCAATAGAAATAGACTGACATACTGGCTACATAAAC
AGGACACAACATTTTGCTGCATACAGGAAACCCATCTCAGGGACAAAGAT
AGACATTACCTCAGAAGAAAAGGCTGGGAAATTGTTTTCCAAGCAAACAA
TCCAAAGATACAAGCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGAGAGATCAACACAGTCAAGT
CACATGGACACTTCTGTGAATATACAAAACCTCCCTAATGTAATAACAAT
GTAAACAGATAATCTTTTAGAGTTTTAAATTCAAATGAATTTTTTCTTAA
AATTTTAAATATCTACAGAGAAGTGACAAAAACCATTAAATCCAGTATTT
CCATTGAGATGATGCTCCATCCCAGAGGATGATATTTGTTCTTTCTTAGC
ACACATCATTTCTTAGCTGTCATCATTTTCATAACATTTGGGATATAAGT
TACTATTTCATAATTGGTAATAGTTTACAAACTCTGTCATATTAGAGAAA
GAAATAATGCAGTTTTACAAGTTTATTAAGGACTTTTCTTTGATTAAATA
TTTATTTCAATATGAAATTACAAATATTGATATCATATTAATATAAGGAC
AACACATGAAAAAATTACTTTAAGTGAGAAGAATAGTATATGGATGTATT
AGTGTAGACCTCAAAATAGTTTTAGGAAATGCTCAATATATATTTTTTAA
CTGTTTGGACATTTTCGTTTATGAATATATGTGAATATGTATTTATTTTT
TCTTTTAGTAGACATTTCTTTATTTACATTATAAATGTTATGTCCTTTCC
TAGTTTCCCCTCTGAAAATTTTCTACCCCCTCCCCTCTTCCACTGCTCTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_j01.g1 MSMg01no188_j01.g1 CHROMAT_FILE:
MSMg01no188_j01.g1 PHD_FILE: MSMg01no188_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:15 2005
         (300 letters)



>mm_chr13_87431941_87432639
          Length = 699

 Score =  534 bits (276), Expect = e-156
 Identities = 294/300 (98%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagagagatcaacacagtcaagtcacatggacacttctgtgaatatacaaaacctccc 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 499 cacagagagatcaacacagtcaagtcacttggacacttctgtgaatatacaaaacctccc 440

                                                                       
Query: 61  taatgtaataacaatgtaaacagataatcttttagagttttaaattcaaatgaatttttt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 439 taatgtaataacaatgtaaacagataaccttttagagttttaaattcaaatgaatttttt 380

                                                                       
Query: 121 cttaaaattttaaatatctacagagaagtgacaaaaaccattaaatccagtatttccatt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 cttaaaattttaaatatctacagagaagtgacaaaaactattaaatccagtatttccatt 320

                                                                       
Query: 181 gagatgatgctccatcccagaggatgatatttgttctttcttagcacacatcatttctta 240
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 319 gagatgatgctccatcccagagggtgat-tttgttctttcttagcacacatcatttctta 261

                                                                       
Query: 241 gctgtcatcattttcataacatttgggatataagttactatttcataattggtaatagtt 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctgtcatcattttcataatatttgggatataagttactatttcataattggtaatagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 699
Length adjustment: 9
Effective length of query: 291
Effective length of database: 690
Effective search space:   200790
Effective search space used:   200790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)