BAC Information

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BAC

Clone NameMSMg01-188N01
Chromosome13 (Build37)
Map Location 92,023,713 - 92,024,002
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2
Downstream geneRasgrf2, Rasgrf2, Msh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188N01.T7 (MSMg01no188_n01.b1)MSMg01-188N01.TJ (MSMg01no188_n01.g1)
ACCAG379711AG379712
length724760
length of high quality
(start - end)
317 (61 - 377)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no188_n01.b1 PHD_FILE: MSMg01no188_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:35 2005CHROMAT_FILE: MSMg01no188_n01.g1 PHD_FILE: MSMg01no188_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGCCCNNNNCCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTCACCTGAGGAATACCAAATGGCTGAGAAG
CACCTGAAAAAATGCTCAACATCCTTAAACATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGTAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGAGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCGGCAA
TACCTCTCCTGGGCATATATCCAGAAAATGTTCCAACCGCCCACAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATTTACACAATGGAGTACTACTCAGTTATTAAAAAGAATGAATTTATG
AAATTCCTAGACAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AATCCAATCACAAAGGAACTCTCACAATACGTACTCACTGATAAGTGGAT
ATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACCATTTGCTAAA
CACATGAAACTCAAGAAGAAAGAA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGGAAAGCGGGTCACACATGGCGG
TGGGGGGCGGGGGGGGGGACCCAGAGGGACAACACCTGCCTCCTTTCACC
ACCAAAGATGGAACTGAACTGTAAATCTGTCTCCAGCAACAGTGAAACCC
AGCTCCATGGACCAAAGACAGATACCCCAGGCTGGGGTGGGAAGGTGTAA
ACTTTGAAGCTTAGGGAAGCTGATGGCACATTTTGTATATGGGATGTAAT
ATAGAGATGCTGGTAGCAATTGTAATGAAGTGGAATGAAGGTAAACCTCC
CCGTGTTCTGTTATATTTTTTCCACCCCCCCCACAGAGAACACCTGCAAT
GTTTCTTTGTCACTCTGCTAGCCTGAAATCAACACTACCAGTACTCTTAA
TCGCTTCTGTTACAGTTCCTTTATGCCAAGCATCATGGCCAGCCTGAAGC
TTCCTTTCTCGGCCCAGCACAGAAGCAGTTTCAGTACGCAGCATGGGTGT
GGTTCTCAGTGTGTTCTCCGTGCCTGGGAGGAGTGATGAACTCTAAAAAC
AGCTTGTATTAATCTTTGTTAAATGGGTCCAGCTCATGAAAAATTATCAA
ACAAGTGGACCTGGGTGTATTTACTCTCCTTAACGATAATCGATCCCATG
TCCGCACACAACATTAATAGGCGGCTTTTAAAATAAAAAGTTGTTTGGCC
CCTAATAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_n01.g1 MSMg01no188_n01.g1 CHROMAT_FILE:
MSMg01no188_n01.g1 PHD_FILE: MSMg01no188_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:35 2005
         (290 letters)



>mm_chr13_92023513_92024203
          Length = 691

 Score =  507 bits (262), Expect = e-148
 Identities = 283/290 (97%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggaaagcgggtcacacatggcggtggggggcgggg-ggggggacccagagggacaac 59
           ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||
Sbjct: 490 tgtggaaagcgggtcacacatggcggtgggggttggggtggggggacccagagggacaac 431

                                                                       
Query: 60  acctgcctcctttcaccaccaaagatggaactgaactgtaaatctgtctccagcaacagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acctgcctcctttcaccaccaaagatggaactgaactgtaaatctgtctccagcaacagt 371

                                                                       
Query: 120 gaaacccagctccatggaccaaagacagataccccaggctggggtgggaaggtgtaaact 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaaacccagctccatggaccaaagacagataccccaggctggggtgggaaggtgtaaact 311

                                                                       
Query: 180 ttgaagcttagggaagctgatggcacattttgtatatgggatgtaatatagagatgctgg 239
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 310 ttgaagcttagggaagctgatggcacaatttgtatatggaatgtaatatagagatgctgg 251

                                                             
Query: 240 tagcaattgtaatgaagtggaatgaaggtaaacctccccgtgttctgtta 289
           || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 250 taacaattgtaatgaagtggaatgaaggtaaacctcctcgtgttctgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)