BAC Information

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BAC

Clone NameMSMg01-190J24
Chromosome13 (Build37)
Map Location 84,930,557 - 84,930,845
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111, LOC382786
Downstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190J24.T7 (MSMg01no190_j24.b1)MSMg01-190J24.TJ (MSMg01no190_j24.g1)
ACCAG380909AG380910
length719720
length of high quality
(start - end)
---289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no190_j24.b1 PHD_FILE: MSMg01no190_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:57 2005CHROMAT_FILE: MSMg01no190_j24.g1 PHD_FILE: MSMg01no190_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGTCTGACCCCCATTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGGGTTCTTTATATATATATTGGATATTACTCCCC
TATCTGATTTAGGATAGGAAAAGATCCTTTCCCAATCGGTTGGAGGCCAT
TTTTTGTCTTATTGACGGTGTCTTTTGTCTTGCAGAAGCTTTGCAATTTT
ATGAGGTCCATAAAGGACATATAAAGCCATTGCTGGTGTATTCAGGAATT
TTTTCCCCTGTAGCCATATCTTCGAGGCTTTTCCCTACTTTCTTCTCTAT
AAGTTTCAGTGTCTCTGTTTTTATCGCCCCCCCCTAATCCACTTAGATTT
GACCTTAGTACACGGAGATAGTAATGGATCAAATCGCATTCTTCTACATG
ATAACAGACAGTTGTGCCAGCACCATTTGTTGGAAATGCTGCCTTTCTTC
CACTGGATGGTTTTAGCTCCCTTGACGAAGATCAAGTGACCATAGGCGTG
TGGGTTCCTTTCTGGGACTTCAATTCTATTACGTTGATCTACTTGTCTGT
TGCTATACCAGCACCATGCCGTATTTATCACCATTGCTCTGTAGTACAGC
TTTAGGTCAGGCATGCTGATTCCTCCAGAGAGTCCCATATATTACAAAAT
ACCTTGTCCTGACTCTAAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATTATTATTGTTATTATTATTAT
TTTGCTTCATTGGTTACCTGGTCAGTGTTCTCAAAGATTTGGCTTAATCT
GTAACCTAAAAGATTTACTGGGTTGTCCCTATTGTTTGTTGATAATAGTA
TACAAGCACAAAACACAGGTCACAGTCTGGAAACCAGTTACTACACTAGA
AAGATATGGCTGGGCCTTGACTCATAACAGAAAAACACATTTTTCCTTTA
GCAGCAAATTTCCATAGAGCCCATGTCAGTCAATTCTTTTTGACTCACAG
CCACTTGCATCCTGCATTTGTTTTCACACCCCCCCATGAGGTCTTTGATC
TCAGCATAACTCTGAGATGACACCTTACAGGGTGACTAAAATAATATTTT
TAAGATCAGATTTTGGTAATTTGCCAGCATTTACTCACTTGACAGGAATA
GCAAAGGTCTTTTGGTATCTGTGATCATAAAGTTTAATACTGTGATGACC
ATGTATTGCAATTAAATGTATTAACCATATTTAAGGACCAGTTCTGTGGT
TGGTGACCAAAGTCAACCTCACCATTACTTGCCAAGTCTATTTTGGAGAA
ACTCTCTCATTAAAAAGTTGGAGCCTCTCTTCTCTAAGCTGCAGTTAGGA
CTTTACTCTTGACTTCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_j24.g1 MSMg01no190_j24.g1 CHROMAT_FILE:
MSMg01no190_j24.g1 PHD_FILE: MSMg01no190_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:57 2005
         (289 letters)



>mm_chr13_84930357_84931045
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattattattgttattattattattttgcttcattggttacctggtcagtgttctcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattattattgttattattattattttgcttcattggttacctggtcagtgttctcaaa 260

                                                                       
Query: 61  gatttggcttaatctgtaacctaaaagatttactgggttgtccctattgtttgttgataa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttggcttaatctgtaacttaaaagatttactgggttgtccctattgtttgttgataa 320

                                                                       
Query: 121 tagtatacaagcacaaaacacaggtcacagtctggaaaccagttactacactagaaagat 180
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tagtacacaagcacaaaacacaggtcacagtctggaaaccagttactacactagaaagtt 380

                                                                       
Query: 181 atggctgggccttgactcataacagaaaaacacatttttcctttagcagcaaatttccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggctgggccttgactcataacagaaaaacacatttttcctttagcagcaaatttccat 440

                                                            
Query: 241 agagcccatgtcagtcaattctttttgactcacagccacttgcatcctg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagcccatgtcagtcaattctttttgactcacagccacttgcatcctg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)