BAC Information

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BAC

Clone NameMSMg01-190P20
Chromosome13 (Build37)
Map Location 103,031,618 - 103,031,913
singlet/doubletsinglet
Overlap genenone
Upstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
Downstream geneCd180, Mast4, EG621312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190P20.T7 (MSMg01no190_p20.b1)MSMg01-190P20.TJ (MSMg01no190_p20.g1)
ACCAG381156AG381157
length698695
length of high quality
(start - end)
316 (46 - 361)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no190_p20.b1 PHD_FILE: MSMg01no190_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:25 2005CHROMAT_FILE: MSMg01no190_p20.g1 PHD_FILE: MSMg01no190_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCC
ATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTA
GTACTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTG
AGGGGCATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAA
AAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAA
TGGCTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCC
AAAGTTTCTGTTTTTTTAAACACACCGCCCATAAGACAAAGAGACCACCA
ACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTTAT
ATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATA
ACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTCTCACCTGAG
GAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAAT
CATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAG
TCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTATAAGTTGTATGGTCCATGC
ACATAAACTTCACAAAAATGCAAACTTGCTTATACAATTGCTTAGGCATA
GGAACGGAAGTATTGGGCAGGAGTGATTATGAATAGGAAGGGAGAAACTT
TTGATAGTAATGGATATTCATTATTTTGATGGTGGTGATGACTTCTGAAT
GATGTATGTCAGAATTTTTCAAACTCTGTACTTTGAGTATAATTTTTACA
GCCAGTTAGACTTCAGTAAAACTGTTATTTTTAGGTCATTGGGAGAAAAT
CCTTTCTACTTTCAGAGTATCTATCGCCGTCAATATTGGTTGGATAGCAA
AGGTGCTGTCAGCATCCTTGCATGACTGTAGCTTCCTCCTTGAACTCTAG
TTCAGTTTCTGCAGGATTCAAAGTAACCTGTCTTTTTGGCTTCTGCCTTC
ATATTTTAAGTCCCTTCTTTTTCTCTTCTTCACTCTATCTGTACTTTCCC
TGTCCCTACTGGCTTCTTCCAGGAGACAGCTGACTCTCTTAGCCTCTTGT
GAATAGTATGTTTACAGGTGGGAACTTTCTACTCTGGATACATGTGCGAT
GATGATGGCTGGGGAGAAATTCCTCTCTTGTACCTATTTAGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_p20.g1 MSMg01no190_p20.g1 CHROMAT_FILE:
MSMg01no190_p20.g1 PHD_FILE: MSMg01no190_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:25 2005
         (296 letters)



>mm_chr13_103031597_103032292
          Length = 696

 Score =  542 bits (280), Expect = e-158
 Identities = 292/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattataagttgtatggtccatgcacataaacttcacaaaaatgcaaacttgcttataca 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aattataagttgtatggaccatgcacataaacttcacaaaaatgcaaacttgcttataca 258

                                                                       
Query: 61  attgcttaggcataggaacggaagtattgggcaggagtgattatgaataggaagggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 257 attgcttaggcataggaacggaagtattgggcaggagtgattatgaacaggaagggagaa 198

                                                                       
Query: 121 acttttgatagtaatggatattcattattttgatggtggtgatgacttctgaatgatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 acttttgatagtaatggatattcattattttgatggtggtgatgacttctgaatgatgta 138

                                                                       
Query: 181 tgtcagaatttttcaaactctgtactttgagtataatttttacagccagttagacttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgtcagaatttttcaaactctgtactttgagtataatttttacagccagttagacttcag 78

                                                                   
Query: 241 taaaactgttatttttaggtcattgggagaaaatcctttctactttcagagtatct 296
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 77  taaaactgttatttttaggtcattgtgagaaagtcctttctactttcagagtatct 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)