BAC Information

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BAC

Clone NameMSMg01-192E02
Chromosome13 (Build37)
Map Location 88,157,025 - 88,157,430
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192E02.T7 (MSMg01no192_e02.b1)MSMg01-192E02.TJ (MSMg01no192_e02.g1)
ACCAG381994AG381995
length1,1881,227
length of high quality
(start - end)
419 (29 - 447)415 (70 - 484)
definitionCHROMAT_FILE: MSMg01no192_e02.b1 PHD_FILE: MSMg01no192_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:22 2005CHROMAT_FILE: MSMg01no192_e02.g1 PHD_FILE: MSMg01no192_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCATTGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCT
TACAAATCAATTATAGTGCACTAAAATATTACTTTATATATGCTGGTTTA
TACATTCCTTTAACAACCATTTAAATAACCTTAAGTCTTAAAGCCTTTGA
TCTATTCACTTTAGTGGCTTTAGTAACTATTGCAATGTAGAACTATGATG
TCACATACAAAGAATCTAGTTTACACATGACTAATGGGAACAAGCAGAGG
TTTCACTGAACTTAAAGGACTTGGAAGTTCGCTCAGAAATAAGACTACAA
TGGCGTAACCCTATTCATCAGTTCTACTGAATCCCATGGGCTTGGGTACA
TCAGAAATTTTAAGAAAGGTTTTCTATATCCATTTCTGAGTGAAAGATCT
TGTGGGCATTAATTACCTTAATCATCTAATGCCTACCACAGTGCCCTATT
TCTTTCATCCCCGCGCTATAGAAACAGATTACAAATCAAGGAAACAAGAT
AATGGTCAGATATATTTATTATATTTGTTATAGAACCACTTTGTCAAAAT
ATATGTCCAATGATTTGTTAGGTAGAACGTGCTGTAATTAGGATAGCGAT
CAAGGCACTTACTTCTCATCAGCCTGATACAGTTAAGAAAAATAGGCTAG
TCCCTTTACCCTATTTGCTTTTTTCTACTTATTATTGCAATGAATAAATT
TTCCCGATAAAAATAAATGATGCAGTAAACTAAATAAATTTACATCTTAT
AATAAACTGTTATTTATAGTCAAGTATTTTTATATACTTACCTAAAATAT
GATTTTTTAAGTTGTTTGTTTATTTTATTTTAATGAGTTACTTGCATAAA
GTATGTGAGTCCCCTATGTATAGTGAATTAAGTACCTAACGAGGAATAAA
ACAGCATGTAATCCAATAGAATCCGAGTTACAAAGATTCTAACTACCTTG
TGAAACTGTTAACTTAACCCGATCTTTTTGAAAAATCACAGTGATTTTAC
TGCTGAATAATTCTTCAGTTCTAATTTTTTTTTTTAAATTTCAAATTTTC
CTATTCCCTCCTTTTTTTTCCATCTCTATCTTTTTTCCCCATGAATAATA
TACTCTTTTACACACTGAAGTTTCTCAATTTATTTTCTTTTGGTGTCTCT
AAAATATCAATAACTTCTCTCGTTCTTTTTTTTTCTAA
NNNCCCTCATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGGTTTCTAAGAATTGGTTTTTATTGACTA
TTTATTTAATTACATTCCAAATGTTATTGGTTTCCCAGTTTCCCATCAAC
AAGCTCACTATAACCCCCTCCCTCCTTCAGCCTCTATGAGAGTGCTCCCC
AACTGCCCACCCACTCCTACCTCAGCAGCCTAGTGTTCCCCTATCCTGGG
TCATCAAGTCTACACAGGACCAAGAACCACTCCTCCCACTGATGTCCGAT
ATGGCCATCCTCTGCTACATAGCCAACTGGAGCCATGGATACAGCCTGTG
TACTATTTGGTTGGTGGTTTAGTCCCTGGGAGCTTCAGGGTATCTGGTTG
ATTGATATTGTTGTTGTCCTATGAGGTTGGAAACCCCTTCAGCGCCTATT
TTTTTTGCCCCCCCTTCCCCATTGGGTTCCCTGCACAAAAAAAAAGAGTT
GGCTGTATATATCCGCATCTGTATTGGTCTAGCTCTGGCAGTCACTCAGG
TGGCAGCTATAGTGGGCTCCTGTCAGTAAGCAGTTCTTGGCATCAGCAAT
AGTATTTGGGTTTATTGTCAGCAGATGAGATGGATCCCTAGGTGGGGTAG
TCTGTGGATGGCCATTCCTTTAGTATCTGCTCCATTCTTTGTCTCTGCAT
TTCCTTTTCACAGGAGGTCTTCTGAATTAATATTTTTGAGGTGTATTGTC
TGCCCCCTCCCTCCAAATTTTCTCTTTCTTATTCTCCTATCTGTGTCTCT
TTATCTTCTATCTCCCTTATCCAGCCTCCCTTCTCTTACTTCCAATCTCT
ACCTCTCCTCTTTACCTCTTTTATTTCCCTCTCTTTCACTCTTCCTATTT
CTCTTTTACTCTTCTCTTTTCTACTATATATTTTTTTTTCTTCTTTCTTT
ACCCTACTTCTCTTTCTTTATCTTACTTTTTTATTCTTTTTATTATTCTA
TTTTCTATAAATATTTTATCTTTTTATTCTTTCTTTTTCCTCTCTTTTCT
TTCTTTCTACTCTTTTTCTTTCTTTCCTTCTTCTCATATTATTATTTTTC
TTTATTCCATTTTTCTATTATCTTTTCTCTTCATTTGTCTACTCATCATT
TTTTATATCTCTTCTTCTTCATCTTATTTTACTATTTCTTCTTATTTCCT
TTTACTATAACTTTATATCCTTTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_e02.b1 MSMg01no192_e02.b1 CHROMAT_FILE:
MSMg01no192_e02.b1 PHD_FILE: MSMg01no192_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:22 2005
         (419 letters)



>mm_chr13_88156811_88157630
          Length = 820

 Score =  754 bits (390), Expect = 0.0
 Identities = 402/406 (99%), Gaps = 1/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattc-ttacaaatcaattatagtgcactaaaatattactttatatatgctggtttat 73
           ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 215 ggaattcattacaaatcaattatagtccactaaaatattactttatatatgctgttttat 274

                                                                       
Query: 74  acattcctttaacaaccatttaaataaccttaagtcttaaagcctttgatctattcactt 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 acattcctttaacaaccatttaaataaccttaagtcttaaagcctttgatctattcactt 334

                                                                       
Query: 134 tagtggctttagtaactattgcaatgtagaactatgatgtcacatacaaagaatctagtt 193
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tagtggctttagtaaccattgcaatgtagaactatgatgtcacatacaaagaatctagtt 394

                                                                       
Query: 194 tacacatgactaatgggaacaagcagaggtttcactgaacttaaaggacttggaagttcg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tacacatgactaatgggaacaagcagaggtttcactgaacttaaaggacttggaagttcg 454

                                                                       
Query: 254 ctcagaaataagactacaatggcgtaaccctattcatcagttctactgaatcccatgggc 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctcagaaataagactacaatggcgtaaccctattcatcagttctactgaatcccatgggc 514

                                                                       
Query: 314 ttgggtacatcagaaattttaagaaaggttttctatatccatttctgagtgaaagatctt 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttgggtacatcagaaattttaagaaaggttttctatatccatttctgagtgaaagatctt 574

                                                         
Query: 374 gtgggcattaattaccttaatcatctaatgcctaccacagtgccct 419
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtgggcattaattaccttaatcatctaatgcctaccacagtgccct 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space:   332510
Effective search space used:   332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)