BAC Information

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BAC

Clone NameMSMg01-192G17
Chromosome13 (Build37)
Map Location 102,108,666 - 102,109,072
singlet/doubletsinglet
Overlap geneLOC100039971
Upstream geneEG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik
Downstream geneLOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192G17.T7 (MSMg01no192_g17.b1)MSMg01-192G17.TJ (MSMg01no192_g17.g1)
ACCAG382102AG382103
length1,2892,095
length of high quality
(start - end)
423 (41 - 463)---
definitionCHROMAT_FILE: MSMg01no192_g17.b1 PHD_FILE: MSMg01no192_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:44 2005CHROMAT_FILE: MSMg01no192_g17.g1 PHD_FILE: MSMg01no192_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTTTTNNNNNNCCTCACTGGGCGCTAAGACTCACTAAGGGAGAGGAT
CCGCGGAATTCTCTTTGTAGGAGGCAACGGTTAGGATGGTAAAGGATGTG
ATGTACTTTCTACTTGTGTGAGGCTGAATATCTGATACAGTTGGTGAGGT
AATTCCTACTTTAAAAGAAATTTGTATAAATCTCCAAGGATACCAACTTC
CTAAATGACCTGCCTCCCATCGTTTAAATAAATTGTATTTTTGGCTAACA
TGCAGAGGAATGTGTTTCACTGTGACATGTTCGTGAACTTACATAATCAT
ACTTTGTACTTATTTCCCACGATACATATATTGACTAGATTCTGCATTTG
AGAGAAAACAATAAACCTAAGTCTGGGTTGTTTTAACATAATGATCCACT
GTTTCATTAACTTTTCTAGAAGTGCCATAATTTCATTGTTAACAGCAGAC
TGAAATGCCACTGTGTGTGTGACACAGTATCTTATTTTCTATGTCCATTC
GACTGTTGATAGACATCTAGGTTGTTTCTGTTTCTTGACTGTTGCGAACG
GAGCAACATCGACCACATGTACAGCAGTATGCTAACTTAAGGTCCTCTAG
TATATACACACAAGTGTTATACTGGATCATATGCTAATGGTTTTAGTATC
TGGGGGAGCTTCCACACAAATTTCCATAGTGGCTGTATTAGCTGATGGTT
CCATCAGCAGTGAGTGAGGGCTGCTCTTTCCCCACATATTCATCAGNGTT
AGTTGTTATCTGTCTTCTTGGCAAAAGCCATCCTGACTGGGATGAGGCAG
AATCACAAGACAGCTTTAATTTCCTTTCCTGATAGCTCAGAGGGTTAAAT
GGGTTTTCATTGAATATTGTATTCTTTTTAAATGGTCTCCTAAATTCTTT
ATTATTCCATTTATTCCTTCTCCCACCACTTTTGTTTTTTTTTTTTTAAA
TTGTACTCCGTGAATTTNCTTATTGATAACTTTATTCTAAAATAATTAAT
TAGATTCTCTTCCCATCCCTGGATACTTTTTTTATTTCTTTTCTTTACAT
TATAAATATTCTTTCTTCTCTTCTACTCCCTTTNCTTTTTTTTTTTCTTA
TCTCCTGTTTTNCTATATCATTTATTTTTCTATTCTTTCTTTTCTCTTCT
TCTTTTTATTTCTTTTTTCCATCTTCTTTCTTTTTCTTTTATACTTCCTT
TCTACCCTTTNTTTCTTTCTTTTATCTTTTTCCTCTCTCTCATCTCATTT
TTCTCTTTTCTAATCTCTTATCCTTTTNTCTTCCCTATG
GGGGGCTTATAATAAGAGGAGGGGCGNNGNNNGNGNANNNNNGGANNNGN
GNNNNNNTNNNGTAAGGGNGAGTCCTCGCTTTTAAAGAGAAGATCGTTGT
TCGCATGAANTAGAATTGGAATCGAATATGATATAAATGTTATGAGTGAT
GTGAAAGAGGAAGAAGTTGGTATNAGTGTAGATGATTTTGTAAAGAGAGT
TCCCTTATAGTATTTAATATGGTTGTAATGTCGACATAATATAAAGATAT
ATTATAATAGAGTGAGAATGTAGTAAGTGTAGTTTGTATTATATACTATG
GTATTGTGAGGTAATTAGTTTAGTTATATACAGTAGAAGAATAATAGATG
TGAGAGTGTTTACTGTTAAATTATAGTATTATTTAGTTATATGAATAACG
TTAAACTCTATGGGTGAAGTTGAGTAATAATGAAATGGTAGTTACTAATA
TTGAAGTATATTATAGTAGTATGATGATATGTATTGGGTATTTTGATAGC
ACATAGAGGAGATGTTATTGAGTATAAATGTGTGTATGTTTAAGGAGATT
GTGTGTAGCTATTTTATTTTATATATAAATAGGAGTAATATTGACGAATA
TTATATAATGTGTGTGTTTGATTGTATGAATATTAGAGATAAGTGCCCAC
ATTTGTGTGTTTGTTTATTGTTATACAACGCCCACTGCCCTGTAAATATG
ATTAGATAATGTTATTCTATTTATACTATATATATGAATAAGAGAGAAAA
TGTATTGTATATTAATTTTCATTATTAGAATAATATATAGAATTATGTAT
TTATGTCTTGTTGAATATAGATTGTAGTGTAAGAAATAATTGGTGTTATA
AATTGTTAATATGGAAGGTGTTGTATATGTATGGATATATTGAGTAATAT
ATAGATTATTATAATAATGTGGGAGTTGATTATGGTAAATTATGATTGGT
AGTATTAAAGAGTGTAATAGTAGTAGGTGATTTATGATATGGTATATAGA
AGAGTATATTGNTAATGTTATTATGTATATTGGTTATAATAGATGTATAT
ATTATGTAGTCTAGAATATCATTGTGTATGTATTGTGAGTTACGTAGATG
TATTATACTTATTTATATATGTTTGTTATATGGACAATTANTTAGTGATA
GTTGTGTGTGTAGGGTATATGTGATTGTGTGTATATGGAATGTCTGATAT
AATAGGATGTTGTATTATTATAATAGATAGAGTATAGTGTGATTATAGTA
TGTGTAGAAGTAATAAGATAATATATGGATTATATATATATAATATATAG
TATATGTGGAGTGATTTAATACATGACGTAAGTATATGATCTACTCATTA
ATACAATGAGATATTTTATATGTAATAGATATTGATGTATTAGTGGTTAT
GAATAAATGACTATTGAAAGAGTATGTATGAGTGTGTGATATTATGATAA
TTTATATTATCGTATGATAGATGTATGAGAAGATTTGAGGATTGTTATTG
TGTGTGAAGGTATTAGTTGATGGTTATGAGTATAGAATAAGTGTGGATAT
GGATTGGTGTATATTTGTAGTTGAATAATATATTATATAGATATAGTGTT
AGTAGTGAGAGAGTGATATTAGTGTATAAAGTGATATGTGTATAATGTAT
ATGTTACTAATGATTATAATAGTGTAGATTGTATATGTGGTAGATTAAGT
AATTGAATGATATAGTAGAGATTATGGAAGTATAATATTGTTGTGAATAA
GATATAATGTGTATATTATGTGAGGTAGATATATAGTAGATATAGTAAAT
GATATAATGTTACAATGTGATTGGATTGTTATATATGTAATGTTATGTGT
ATATATGATATTGTATATAAGTAGTCTAGTTAATATTAGTGATGTTATAG
GTATGATGATATATTTAGATGGCTTAATAATTTGATAGAGATATGCGAGT
GATGGTATGGAGTGAAAGTATGTATAATATTTGAAATATATGTAGTGTGA
TATAAATAGTTAGTGAGTGGCTGNATTATAGAGTATTTAATATAGTGTGG
AANACTGTTAGCTGTAGTGGNATGATGTGTGATGATATATANATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_g17.b1 MSMg01no192_g17.b1 CHROMAT_FILE:
MSMg01no192_g17.b1 PHD_FILE: MSMg01no192_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:44 2005
         (423 letters)



>mm_chr13_102108451_102109272
          Length = 822

 Score =  743 bits (384), Expect = 0.0
 Identities = 402/408 (98%), Gaps = 1/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctctttgtaggaggcaacggttaggatggtaaaggatgtgatgtactttctactt 75
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctctttgtaggaggcaatggttaggatggtaaaggatgtgatgtactttctactt 275

                                                                       
Query: 76  gtgtgaggctgaatatctgatacagttggtgaggtaattcctactttaaaagaaatttgt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtgtgaggctgaatatctgatacagttggtgaggtaattcctactttaaaagaaatttgt 335

                                                                       
Query: 136 ataaatctccaaggataccaacttcctaaatgacctgcctcccatcgtttaaataaattg 195
           |||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ataaatctcctaggatag-aacttcctaaatgacctgcctcccatcgtttaaataaattg 394

                                                                       
Query: 196 tatttttggctaacatgcagaggaatgtgtttcactgtgacatgttcgtgaacttacata 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tatttttggctaacatgcagaggaatgtgtttcactgtgacatgttcgtgaacttacata 454

                                                                       
Query: 256 atcatactttgtacttatttcccacgatacatatattgactagattctgcatttgagaga 315
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 455 atcatactttgtacttatttcccacgatacatatattgtctagattctgcatttgagaga 514

                                                                       
Query: 316 aaacaataaacctaagtctgggttgttttaacataatgatccactgtttcattaactttt 375
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 515 aaacaataaacctaagtctgggttgttttaacataatgatcccctgtttcattaactttt 574

                                                           
Query: 376 ctagaagtgccataatttcattgttaacagcagactgaaatgccactg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctagaagtgccataatttcattgttaacagcagactgaaatgccactg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)