BAC Information

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BAC

Clone NameMSMg01-193C10
Chromosome13 (Build37)
Map Location 102,016,461 - 102,016,748
singlet/doubletsinglet
Overlap genenone
Upstream geneNaip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193C10.T7 (MSMg01no193_c10.b1)MSMg01-193C10.TJ (MSMg01no193_c10.g1)
ACCAG382574AG382575
length724724
length of high quality
(start - end)
328 (45 - 372)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no193_c10.b1 PHD_FILE: MSMg01no193_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:25 2005CHROMAT_FILE: MSMg01no193_c10.g1 PHD_FILE: MSMg01no193_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTATCTCTGTAGCCCAATTTTTAATAGGGTTATTTGATTTT
CTGGAGTCTTAACTTCTTGAGCCCTTTTATATATTGGATATTAGCCTTCT
ATAAGATGTAGGATTAGTAAAGATCTTTTCCCAATCTGTTGGTTGCCATT
TTTCCCAATGACAGTGTCCTTTGCCTTATAGAAGCTTTGTAATTTCATGA
GGTCCCATTTGTCAATTCTTGATCTTAGAGCATAAGCTATTGGTGTTCTG
TTCAGAAAATTTCCTCGGTGCCCATGCCCTTGAGACTCTTCCTCCACTTT
CCTTTCTATTATTTTCAGTGCATCTGGCCTTATGTGGAGGTCCTTGATTC
ACTTGGACTTGAACTTTGTACAAGGAGATAAGAATGGATCAATTCGCATT
CTTCTATATACTAATGGCCAGTTGAGCCAGCACCATTTGTTGAAAATGCT
GTCTTTTTTTCCACTGGATGGTTTAAGCTCCTTTATTAAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATACTATTCCATTGATT
TACCTGTCTGCCACTGTACCAATACTATGCATTGTTTGTTTGTCTGTTTT
TGCTTTCGCTTTTCCACCACCTGCTCTTGTACCCCTCCTCGATGTTTCTT
TTGGTGACCCCCACCTATCTTCCC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATAGGGTGGGACATAAAATCTGGCT
TTGCCTTTGAGAGAGAATGAATACCAAGGCTGTGTTAGACGGTAGTAGAT
GCCTTCGTTTTCCTAGAAAAGGTTAGGTATGTTGAGTTAACCCAATTCTT
AACTACACCCTGCTCTGGAACAACTCTGGGACTTTGCTCTTTGTGTTCAT
ACAAGACCCTTAGTTCATTGTTTAATTTCATGTTTGTGACCTGGATTCCT
GGTCATAATGTGCTGAAGTCAAGGGCTTTCGTTGTCCTTCTCTATGTCCC
TTTATGATTCTGTATTAGTGTGCCTCCACACATAGAAATTTCTCACAGAC
ATTTCACCATCAGCACTGAACTCTCTTTGAAATAACCAAGAGAAGCTCGT
GGAGGATGTACTGCTGAACCTCCTGCCTGGCCCAACAAGCTATCTAGGAA
ATCCCTAAAACCATTGCCAGGCTTTTGATTTACAGACCAACTTCGTAAGG
AATGCCTGATGTTGCTCATGAGGACAGGGCATGGGATGATTGCATAATTC
TATCTATAAGGGAGGAGAGTAAGAAAATCTCAATAGGTCCTAACTGGAGC
CTTAACGATCATCATACATATACATAGATGCTCCTGTGAGGTATATTACC
CATATGTCTGATAGGGTTGGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_c10.g1 MSMg01no193_c10.g1 CHROMAT_FILE:
MSMg01no193_c10.g1 PHD_FILE: MSMg01no193_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:25 2005
         (290 letters)



>mm_chr13_102016261_102016950
          Length = 690

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagggtgggacataaaatctggctttgcctttgagagagaatgaataccaaggctgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 488 catagggtgggacataaaatctggctttgcctttgagagagaatgaatacaaaggctgtg 429

                                                                       
Query: 61  ttagacggtagtagatgccttcgttttcctagaaaaggttaggtatgttgagttaaccca 120
           | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 428 taagacggtagtagatgccttcattttcctagaaaaggttaggtatgttgagttaaccca 369

                                                                       
Query: 121 attcttaactacaccctgctctggaacaactctgggactttgctctttgtgttcatacaa 180
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 368 attcttaactacaccctgctctggaacatctctgggactttgttctttgtgttcatacaa 309

                                                                       
Query: 181 gacccttagttcattgtttaatttcatgtttgtgacctggattcctggtcataatgtgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gacccttagttcattgtttaatttcatgtttgtgacctggattcctggtcataatgtgct 249

                                                           
Query: 241 gaagtcaagggctttcgttgtccttctctatgtccctttatgattctg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaagtcaagggctttcgttgtccttctctatgtccctttatgattctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)