Query= MSMg01no193_o16.b1 MSMg01no193_o16.b1 CHROMAT_FILE:
MSMg01no193_o16.b1 PHD_FILE: MSMg01no193_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:37 2005
(286 letters)
>mm_chr13_9419214_9419899
Length = 686
Score = 491 bits (254), Expect = e-143
Identities = 278/290 (95%), Gaps = 8/290 (2%)
Strand = Plus / Plus
Query: 1 gaacccccgtgtcctgattttggagtgagtacaacagcatcaagtttgtcacgaatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 201 gaacccccgtgtcctgattttggagtgagtacaacagcatcaagtctgtcatgaatgtgt 260
Query: 61 gttccttatgtctatcctcttaatattttcagtgatctgaactaagaaatctttaaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttccttatgtctatcctcttaatattttcagtgatctgaactaagaaatctttaaaatc 320
Query: 121 tgtgtcttgagaaatctgccaaactgggtgaagcttccctcttagaaccagccttgtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtcttgagaaatctgccaaactgggtgaagcttccctcttagaaccagccttgtggt 380
Query: 181 aaatagtactgacttgttcagttattgtctggctggagtttttcttaatgccacagcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatagtactgacttgttcagttattgtctggctggagtttttcttaatgccacagcagt 440
Query: 241 ggagagcatttt----aatttgccaggggcacattgccatcagaggtaga 286
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagagca----gcagaatttgccaggggcacattgccatcagaggtaga 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no193_o16.g1 MSMg01no193_o16.g1 CHROMAT_FILE:
MSMg01no193_o16.g1 PHD_FILE: MSMg01no193_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:37 2005
(657 letters)
>mm_chr13_9540618_9541674
Length = 1057
Score = 1162 bits (601), Expect = 0.0
Identities = 648/676 (95%), Gaps = 20/676 (2%)
Strand = Plus / Minus
Query: 1 cttttgtagttatccagctacacaacaaccctcttctaacactgcttctgccacagactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 cttttgtagttatccagctacacaacaaccctcttctaacactgcttctgccacagactg 986
Query: 61 atctctctgtttgctaagctcc-------------taactgctcttcaatctacattatc 107
|||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 985 atctctctgtttgctaagctcctaacggtgattcataactgctcttcaatctatattatc 926
Query: 108 tataaaacaaaccaagaggttaggttgctgtgcttccatatgtaaggatctgagagtcaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tataaaacaaaccaagaggttaggttgctgtgcttccatatgtaaggatctgagagtcaa 866
Query: 168 ga-------tcattgattttacacagttccccatatactcttcctcatatttatgatata 220
|| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gatcgtctttcattgattttacacagttccccatatactcttcctcatatttatgatata 806
Query: 221 gaaattccagaaagatgtgatgtgaaaataaggctagaactattatttctcaatgtggct 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaaattccagaaagatgtgatgtgaaaataaggctagaactattatttctcaatgtggct 746
Query: 281 ggagaaacccaatgacatagtgtcctgcaaccaaacagaaactgctgccaagggctccct 340
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 745 ggagaaacccaatgacatagtgtcctgcaaccaaacagaaactgctgccaaaggctcctt 686
Query: 341 gaccacaggctagattagggatttcactcagccttttgtcctgtgtcaggccccaagaaa 400
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gagcataggctagattagggatttcactcagccttttgtcctgtgtcaggccccaagaaa 626
Query: 401 gaatttgggaaaaacctgatcatagaggtgtgaatgactattactactttctaaattaaa 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaatttgggaaaaacctgatcatagaggtgtgaatgactattactactttctaaattaaa 566
Query: 461 tgcacttaaatcacaggtagttagaggtcagtgactaggtgaaattttatcttgtgtacc 520
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 tgcacttaaatcacaggtagttagaggttagtgactaggtgaaattttatcttgtgtacc 506
Query: 521 aaatgtgtaccaaatttcttacaaaattgaatgctaatttcatccaaagtggaagtgcag 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatgtgtaccaaatttcttacaaaattgaatgctaatttcatccaaagtggaagtgcag 446
Query: 581 aagatgaaagatacttttggagcaaacaagcattatttagaatttaataggtcagtgtan 640
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagatgaaggatacttttggagcaaacaagcattatttagaatttaataggtcagtgtaa 386
Query: 641 aatgtgttttgaagga 656
||||||||||||||||
Sbjct: 385 aatgtgttttgaagga 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
