BAC Information

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BAC

Clone NameMSMg01-194E03
Chromosome13 (Build37)
Map Location 24,192,234 - 24,326,309
singlet/doubletdoublet
Overlap geneLrrc16
Upstream geneV1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194E03.T7 (MSMg01no194_e03.b1)MSMg01-194E03.TJ (MSMg01no194_e03.g1)
ACCAG383250AG383251
length762892
length of high quality
(start - end)		539 (70 - 608)195 (79 - 273)
definitionCHROMAT_FILE: MSMg01no194_e03.b1 PHD_FILE: MSMg01no194_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:05 2005CHROMAT_FILE: MSMg01no194_e03.g1 PHD_FILE: MSMg01no194_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,192,234 - 24,192,772)(24,326,119 - 24,326,309)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGA
ATTCACTAGATGTTTCCGAACATGAAACATCTCTACAGCATTTATATTAA
TTTCTACTCTAGATGTATGTGATACCATTTTCTACATATTCAAATTGATA
CAGGAATTTAAAGACTCTTCATTTCATATTTCCTATGCCATAGGTTTGTG
ATGCCTTGCGGTTAAACATAGAAACTCTGCTGCGCACTCTTGTATGTTGA
GCACAGATCTTTGGAGTCACAGGAATACTTCAGGAAATTCTATTATTCAT
ACTTTTTAAGGTAATAGCAAATTGCTGTCAGGTGCCTTAGGTGAGAGTCA
CTCAGAGGGAGACCTCTCAGGGAACAGCCCTACAGCCTGACGCTTCTCAG
TCTCCAGGGCCATGTCCACAGGGATGGGTTGATTCCCAGGAATCCTGGAG
ACACTATAATTCAGCATGCTCAAATCCTTTATGCATAGACCATGCAGGAG
CTGCATGCGAGGTACACATGTTCTCCCTTGACATTAGTTCACGTCCAGGG
TACTGCAACGTTCAACCGTACACAATGCCATGTGAAGTGTCTCTAGGCTG
TACTGTTCGGTGAGTGTCGATTAAGAGGAGCAGCCCGTATCTGTTCAGTA
TAGACACCATTTTTCTCCAAATAATCTGAAGCCACAGTTGAATGATCTCT
CAGACGTATATTCCTAATTTTGTCAAGGAAGAGATGTGTATTGATAGATA
ACCTTCAGGTGG

CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAACCCTATGGAATAGACAGA
ATTCTTAGGGTACACAGCCAAGGGACTGGGAAAATGGATCAGTGAATGAA
GTGCTGGCCGTGTAAGCATGGAGACCTAGGATTGGATCCTAGGCATCCAA
GTAAAAAGATATACTCAGTGATGTTCATCTGTCAGCTCAGTGCAGAGGGA
GAGGAGAGGGGAGGGGAGGGGTTNTTTTTTTTTNNTTTTTTTTTTTTTTT
TTTTTTCNTTTTTTTTTTTTTTTCTTTTTTTTTTCTTNTCCTCATCTGTT
CTCTCTTTTTTTTTATGTTTTTCTCTTACATCTATTGCCTTCTTCCATTC
TTCTTTTTTTTTTTTTTTCTCTCCCCCCCCCTTTTACTATTGCTTCTTTT
CTTTTACTTTCCTCCTATACTATTCTTCTTCTTCTTTTTCTCCTCTTCCT
TCGTTCCTTCCTTATCTCACTGTCTTTTCCTATTCTCATTCTATTCTCCT
TTCTTCCCGCTCTTTTCTCCCTCCTCCTTTTTCATATACTTTTCCTCAAC
TATCTTTTTTTCTTATTCCTTCTATTTCATGCTTCCTTTCTCTATCCCCT
TATTATTTTTCCCTCCTATTATCGTCCCGCTTTTTTTGTCTCTCCTATTC
TCTTTATGTTTAACTCACTCTTCTTAAGTTACGCTGTATACTCGTTACTA
AGGTCTTTTATTCTGTTGTATCTCAATGAGATTTTCAGTAGTATAATGGT
ATGTAGACACTAGTCCCTATTCACCTTTGCGTCTCTACTCCTTGCTATGT
TTTTCCTTTTTATTCTTCCATCCCGTACTTATTTGCGTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_e03.b1 MSMg01no194_e03.b1 CHROMAT_FILE:
MSMg01no194_e03.b1 PHD_FILE: MSMg01no194_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:05 2005
         (539 letters)



>mm_chr13_24192034_24192972
          Length = 939

 Score =  973 bits (503), Expect = 0.0
 Identities = 530/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgaaacatctctacagcatttatattaatttctactctagatgtatgtgataccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 acatgaaacatctctacagcatttatattaatttctactctagatttatgtgataccatt 260

                                                                       
Query: 61  ttctacatattcaaattgatacaggaatttaaagactcttcatttcatatttcctatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctacatattcaaattgatacaggaatttaaagactcttcatttcatatttcctatgcc 320

                                                                       
Query: 121 ataggtttgtgatgccttgcggttaaacatagaaactctgctgcgcactcttgtatgttg 180
           | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 acaggtttgtgatgccttgcagttaaacatagaaactctgctgcacactcttgtatgttg 380

                                                                       
Query: 181 agcacagatctttggagtcacaggaatacttcaggaaattctattattcatactttttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacagatctttggagtcacaggaatacttcaggaaattctattattcatactttttaa 440

                                                                       
Query: 241 ggtaatagcaaattgctgtcaggtgccttaggtgagagtcactcagagggagacctctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaatagcaaattgctgtcaggtgccttaggtgagagtcactcagagggagacctctca 500

                                                                       
Query: 301 gggaacagccctacagcctgacgcttctcagtctccagggccatgtccacagggatgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaacagccctacagcctgacgcttctcagtctccagggccatgtccacagggatgggt 560

                                                                       
Query: 361 tgattcccaggaatcctggagacactataattcagcatgctcaaatcctttatgcataga 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 561 tgattgccaggaatcctggagacactataattcagcatgctcaaatcctttctgcgtaga 620

                                                                       
Query: 421 ccatgcaggagctgcatgcgaggtacacatgttctcccttgacattagttcacgtccagg 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 ccatgcaggagctgcatgcgaggtacacattttctcccttgacattagttcacgtccagg 680

                                                                      
Query: 481 gtactgcaacgttcaaccgtacacaatgccatgtgaagtgtctctaggctgtactgttc 539
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 gtactgcaacgttcaaccgtacacaacgccatgtgaagtgtctctaggctgtactgttc 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no194_e03.g1 MSMg01no194_e03.g1 CHROMAT_FILE:
MSMg01no194_e03.g1 PHD_FILE: MSMg01no194_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:05 2005
         (195 letters)



>mm_chr13_24325919_24326513
          Length = 595

 Score =  323 bits (167), Expect = 4e-93
 Identities = 185/191 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaccctatggaatagacagaattcttagggtacacagccaagggactgggaaaatgga 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 391 taaatcctatggaatagacagaattcttagggtacacagccaagggactgggaaaatggc 332

                                                                       
Query: 61  tcagtgaatgaagtgctggccgtgtaagcatggagacctaggattggatcctaggcatcc 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcagtgaatgaagtgctcgccgtgtaagcatggagacctaggattggatcctaggcatcc 272

                                                                       
Query: 121 aagtaaaaagatatactcagtgatgttcatctgtcagctcagtgcagagggagaggagag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aagtaaaaagatacactcagtgatgttcatctgtcagctcagtgcagagggagaggagag 212

                      
Query: 181 gggaggggagg 191
           | |||| ||||
Sbjct: 211 gagaggagagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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