Query= MSMg01no194_i10.b1 MSMg01no194_i10.b1 CHROMAT_FILE:
MSMg01no194_i10.b1 PHD_FILE: MSMg01no194_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:25 2005
(658 letters)
>mm_chr13_115575126_115576182
Length = 1057
Score = 1058 bits (547), Expect = 0.0
Identities = 633/669 (94%), Gaps = 18/669 (2%)
Strand = Plus / Plus
Query: 4 ggaattcttagaagcccttggccttatgtgatagagacaaaaagaaagcaaagaacaatt 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcttagaagcatttggccttatgtgatagagacaaaaagaaagcaaagaacaatt 260
Query: 64 tatcaggctggagagatggctcagtggataaaagcactgactgctcttccagaggtcctg 123
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 261 tgtcaggctggagagatggctcagtggataagagcactgactgctctaccagaggtcctg 320
Query: 124 agttcaattcccaggaacaacatggtggctcacaaccatctgtaatgggattggatgccc 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcaattcccaggaaccacatggtggctcacaaccatctgtaatgggattggatgccc 380
Query: 184 tcttctggtgtctctgatgacagcaacagtgtactcacataatacatacata----cata 239
||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 381 tcttctggtgtgtctgatgacagtaacagtgtactcacataatacatacatacatgcata 440
Query: 240 cataatacataattttttttaaaaaaagaacaatatatct-atgcaacctcatttaacaa 298
|||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||
Sbjct: 441 catactacataattttttt--aaaaaagaacaatatatctga-gcaacctcatttaacaa 497
Query: 299 attttaattcttgattgaaatttgatatttctgcttttcccttgggaagggatggaaatg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attttaattcttgattgaaatttgatatttctgcttttcccttgggaagggatggaaatg 557
Query: 359 ctacatccacctctgcttttctcctaaatgagccaatgaatgaataagaataaagacaat 418
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 558 ctacatccacctctgcttttctcctaaatgagccaatgaatgaataaggataaagacaat 617
Query: 419 aagtgtct-acaatgtaaacttagactagaagcaacggaatcaagaaatggtaaaatcca 477
| |||||| | |||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct: 618 atgtgtctta-aatgtaaagttaggctagaagcaacagaatcaagaaatggtaaaatcca 676
Query: 478 caggattctatagacagggtcaaagaacagagtattcaattactatcaagaggtcaggga 537
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 677 caggattctatagacagagtcaaagaacagagtattcagttactatcaagaggtcaggga 736
Query: 538 aagttccacggaggtacaggacagcctaattgacattaaggtcaatggcacagagtgaaa 597
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aagttccacagaggtaaaggacagcctaattgacattaaggtcaatggcacagagtgaaa 796
Query: 598 t--------ggtctcaagtcacattttgctgtatgtggtgagcttttgtgcattgttccc 649
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tagctctttggtctcaagtcacattttgctgtatgtggtgagcttttgtgcattgttccc 856
Query: 650 attagtatt 658
|||||||||
Sbjct: 857 attagtatt 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space: 678456
Effective search space used: 678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_i10.g1 MSMg01no194_i10.g1 CHROMAT_FILE:
MSMg01no194_i10.g1 PHD_FILE: MSMg01no194_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:25 2005
(560 letters)
>mm_chr13_115635675_115636634
Length = 960
Score = 899 bits (465), Expect = 0.0
Identities = 480/485 (98%), Gaps = 2/485 (0%)
Strand = Plus / Minus
Query: 76 gccatgagtccctgtcaggtggttctgtggaccatattcttgtgatgtccctaatc-cct 134
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 960 gccatgagtccctgtcaggtggttctgtggaccatattcttgtgatgtccctaa-cacct 902
Query: 135 ctgatttctccaatccttcctctgcctcctcagcaagactcccagagttcctcaatgttt 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ctgatttctccaatccttcctctgcctcctcagcaagactcccagagttcctcaatgttt 842
Query: 195 gtccatggttctctgcatctgttccatcaactgatggatgaagactctctggtctctttg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtccatggttctctgcatctgttccatcaactgatggatgaagactctctggtctctttg 782
Query: 255 atgatgatttagctaggctctggggggatggggtaggactactcttttaatgtggtgaac 314
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atggtgatttagctaggctctggggggatggggtaggactactcttttaatgtggtgaac 722
Query: 315 tatgaagtacaaaccacattgaaatcatgacaggttgtgagaagctggcctgccttatca 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tatgaagtacaaaccacattgaaatcatgacaggttgtgagaagctggcctgccttatca 662
Query: 375 ggtcacatcagctcactgcaacagttgagcctttactgaaagaacaaaagatttggccac 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggtcacatcagctcactgcaacagttgagcctttactgaaagaacaaaagatttggccac 602
Query: 435 tgggcctctgagaaaggagcctaagggccccaccctgcaccccacatgtcagcaggattt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgggcctctgagaaaggagcctaagggccccaccctgcaccccacatgtcagcaggattt 542
Query: 495 cctggcaggttgaaaacactgacaaccaccgctttgctttccaattctgatgtggtgttc 554
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 cctggcaggctgaaaacactgacaactaccgctttgctttccaattctgatgtggtgttc 482
Query: 555 ttctc 559
|||||
Sbjct: 481 ttctc 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
