Query= MSMg01no194_l21.b1 MSMg01no194_l21.b1 CHROMAT_FILE:
MSMg01no194_l21.b1 PHD_FILE: MSMg01no194_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:42 2005
(673 letters)
>mm_chr13_29827796_29828867
Length = 1072
Score = 1253 bits (648), Expect = 0.0
Identities = 665/672 (98%), Gaps = 4/672 (0%)
Strand = Plus / Plus
Query: 5 gaattcttccactcctccgggaaaagccacggagaaaaaacttgggggtgggggacggct 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 202 gaattcttccactccactgggaaaagccacggagaaaaaacttgggggtgggggatggct 261
Query: 65 aaaagagaaagaatcacagagaccaggccaagagtacaggaaggtaacagggaaaagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaagagaaagaatcacagagaccaggccaagagtacaggaaggtaacagggaaaagaaa 321
Query: 125 tttacaaaatcagacacatagagggacccacactatcctcaaaataaaataaaattttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttacaaaatcagacacatagagggacccacactatcctcaaaataaaataaaattttta 381
Query: 185 atttaaattttcaaaaaaagttaaactggagaggttgaaatggcatctgtttccattttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttaaattttcaaaaaaagttaaactggagaggttgaaatggcatctgtttccattttg 441
Query: 245 tctcattagaaccagagcaaagggacagatgggatgttgtgtcaattaacagggtcttga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctcattagaaccagagcaaagggacagatgggatgttgtgtcaattaacagggtcttga 501
Query: 305 tacagagatttttcccaacatcttcctttaaaaaaaaaaaaaaaaaaa---gccatctca 361
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 502 tacagagatttttcccaacatcttcctttaaaaaaaaaaaaaaaaaaaaaagccatctca 561
Query: 362 gagcagggggaaaatgagcaaagtttctagccaacactttctaaacaggaacggccaaac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gagcagggggaaaatgagcaaagtttctagccaacactttctaaacaggaacggccaaac 621
Query: 422 actgtcctgagatcaacaacagctcactctgcagcatattccactgaggacccaaatcca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 actgtcctgagatcaacaacagctcactctgcagcatattccactgaggacccaaatcca 681
Query: 482 gtcaatgtctcctgaacatgaagtagctgactcccagcaatgtcagatgcaggcagcctt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gtcaatgtctcctgaacatgaagtagctgactcccagcaatgtcagatgcaggcagcctt 741
Query: 542 ttcttccgtagataagcaaagacttggggaaagagaggggacttttttaaaagaaaaaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ttcttccgtagataagcaaagacttggggaaagagaggggacttttttaaaagaaaaaaa 801
Query: 602 aggaactttttaaagtaataaactccaaaataaaaaattaaaacaaaaagtccaatgttc 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 -ggaactttttaaagtaataaactccaaaataaaaaattaaaacaaaaagtccaatgttc 860
Query: 662 agtctcaacagt 673
||||||||||||
Sbjct: 861 agtctcaacagt 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space: 704106
Effective search space used: 704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_l21.g1 MSMg01no194_l21.g1 CHROMAT_FILE:
MSMg01no194_l21.g1 PHD_FILE: MSMg01no194_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:42 2005
(288 letters)
>mm_chr13_29929788_29930475
Length = 688
Score = 534 bits (276), Expect = e-156
Identities = 285/288 (98%)
Strand = Plus / Minus
Query: 1 tcagacctgtttattaaacagggttaggaaatggtaaagcagaaagagttgaactctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcagacctgtttattaaacagggttaggaaatggtaaagcagaaagagttgaactctgca 429
Query: 61 ctttcacattcccctctgacttgacgtgggtttgagggttgatgtaagaggggcctagat 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctttcacattcccctctgacttgacgtgggtttgagggttgatgtaagaggggcctagaa 369
Query: 121 tcttggtacaggtttatatatactctttggtatgtattatatttatggtaatctgagggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcttggtacaggtttatatatactctttggtatgtattatatttatggtaatctgagggc 309
Query: 181 tttcttagtggtggtagttgtgccttaacattgtcttcatgaacctgatcatcttagacc 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 308 tttcttagtggtggtagttgtgccttaacattgttttcatgaacctgatcatcttagacc 249
Query: 241 ctcctctccataatccacaacgctttggcaccactgctgtttagtata 288
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 248 ctcctctccataagccacaacgctttggcaccactgctgtttagtata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
