CCANACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAG
ATCCGCGGAATTCTGGATCTATCCGGTTTGTGTTGGGTTACCTGCAGATT
AGTGATTGAATTTCCCCCTTTTGTGAAAATTTGTGAATAAATTTTTAGAG
TATATGGAAATATTTACATGTTTAGGTTGAAATTTTGATAAATGAACAGA
AAAGAAATTCTGGCATATAACTTCATAGACAATTAATGTAGCATTTACGA
ATTTTCTCAATATTCATATTTACATATAACTAACTATCCTCAAATTATAA
CTATATTGAAATTATGTTCCCCCTCTTTTTTTGTTTTGTTTTTTCCAGAC
AGGGTTTCTTTGTGTACCAGTGACTGAACTGGAACTTACCTTGTAGACCA
GTTTGGCTTTAGACTCAGATCTGCCTGCCTCTGCCACCCAACTGCTGGGA
TTAAAGGCGTGTGCTGTCGCTGCTCTGTATAAGTTTTTACTTATATTTTA
AATGTATCAATGTGTTTTGAATAATTTACTATGCTCGTTTAAAGTTAACA
AAAGATGACATTTATAAATGCCCAAATTATTCCTCAAGTTTTACTTTTAT
AAATAAGGCCCTTTTACATGCAGATTGTTGCTTTAGTTTCAATTTTTTCC
CCAGGATAAAATTCTAGAAATAATGTTCCTGCATCAAAGGGGTTATAGTT
TTTTAAGCTCGATAAATATGGAAATTTTCAAT

CCANNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCTGAGAAGCACTTGAAAAAATGCTCAGCATCCTTAATCATCAGA
GAAATGCAAATCAAAACAACCTTGAGATTCCATTTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGGGACAGCAGATGCTGGCGAGGATGTGGAG
AAAGAGGAACACTCCTCCATCCTCCATTGTTGGTGGGATTGCAAGCTTGT
ACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATGGGACATAG
TACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGATGTC
CCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATT
TATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAAT
GGATACAAAAAATGTGGTACATTTACACAAAGGAGTACTACTCAGCTATT
AAAAAGAATGAAATTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGA
CATCATCCTGAGTGAGGTAACACAATCACAAAAGAACTCAAATGATATGT
ACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATACCCGAGATAT
AAGATACAATTTGCAAAACACATGAAACTGAAGAAAN

Query= MSMg01no195_d18.b1 MSMg01no195_d18.b1 CHROMAT_FILE:
MSMg01no195_d18.b1 PHD_FILE: MSMg01no195_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:23 2005
         (680 letters)



>mm_chr13_17763922_17765002
          Length = 1081

 Score =  886 bits (458), Expect = 0.0
 Identities = 476/482 (98%), Gaps = 1/482 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctggatctatc-cggtttgtgttgggttacctgcagattagtgattgaatttccc 64
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaattctggatctaacaaggtttgtgttgggttacctgcagattagtgattgaatttccc 423

                                                                       
Query: 65  ccttttgtgaaaatttgtgaataaatttttagagtatatggaaatatttacatgtttagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccttttgtgaaaatttgtgaataaatttttagagtatatggaaatatttacatgtttagg 363

                                                                       
Query: 125 ttgaaattttgataaatgaacagaaaagaaattctggcatataacttcatagacaattaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgaaattttgataaatgaacagaaaagaaattctggcatataacttcatagacaattaa 303

                                                                       
Query: 185 tgtagcatttacgaattttctcaatattcatatttacatataactaactatcctcaaatt 244
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 302 tgtagcatttatgaattttctcaatattcatatttgcatataactaactatcctcaaatt 243

                                                                       
Query: 245 ataactatattgaaattatgttccccctctttttttgttttgttttttccagacagggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ataactatattgaaattatgttccccctctttttttgttttgttttttccagacagggtt 183

                                                                       
Query: 305 tctttgtgtaccagtgactgaactggaacttaccttgtagaccagtttggctttagactc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tctttgtgtaccagtgactgaactggaacttaccttgtagaccagtttggctttagactc 123

                                                                       
Query: 365 agatctgcctgcctctgccacccaactgctgggattaaaggcgtgtgctgtcgctgctct 424
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 122 agatctgcctgcctctgccacccaactgctgggattaaaggcgtgtgctgccgctgctct 63

                                                                       
Query: 425 gtataagtttttacttatattttaaatgtatcaatgtgttttgaataatttactatgctc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gtataagtttttacttatattttaaatgtatcaatgtgttttgaataatttactatgctc 3

             
Query: 485 gt 486
           ||
Sbjct: 2   gt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space:   717570
Effective search space used:   717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)