BAC Information

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BAC

Clone NameMSMg01-195K09
Chromosome13 (Build37)
Map Location 88,842,198 - 88,842,482
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675707, LOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195K09.T7 (MSMg01no195_k09.b1)MSMg01-195K09.TJ (MSMg01no195_k09.g1)
ACCAG384085AG384086
length729731
length of high quality
(start - end)
320 (46 - 365)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no195_k09.b1 PHD_FILE: MSMg01no195_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:56 2005CHROMAT_FILE: MSMg01no195_k09.g1 PHD_FILE: MSMg01no195_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCAGACTTTCAAATAAGACATAATACCAACTCTCTTCAAACTA
GTCCACAAAATAGAAACAGAAGGAACAATACCCAGTTTGTTCTATGAAGC
CACATTTACACTAATGCCAAAACAACTCAAAGACCCAAAAAGAAAAATAA
CTTTAGACCAATTGCCCTTATGAATATTGATGCAAAAATAATAAAATTCT
CAAAAACCAAATCCAAGAAGACATCAAAATGATCATTAACCACTATCACA
GGGATGCAGGGATGGTTCAATATACAAAAAAATCCATAAACATAATTCAC
TTCATAAAAAATGCTATTAAAAAACACCCGCACCATTTCATAAGATGCTG
AAAAGCATTTGACAAAATTCAACATCCCTCAATGATAAAAGTCTTGGAAA
TATCAGGATTAAAGGCCCATACCTAAACATAGTAAAAGCAATATACAGCA
AACCAGTAGCCAACATCAAACTCAATGGAGAGAATCTTGAAACAATACCA
CTAAAATCAAGGACTAGACAAGGTTGTCGACTCTCTCCCTATCTATTCAA
TATAGTGCTTAAAGTTCTAACTAGAGCAATTAGACAACAAAAGGAGGTCA
AAGGGATCCAAATTGGAAAGGAAGAAGTCAAAATATCACCATTTGCTGAT
GATATGATAGTGTACTTAAGTAACTCCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCATCAAAGTCAGTAGAGATT
TCCCTTAAAATAAGTTTTTATACGTTTGCAACTGAAATTACAGCTCATTT
TATCCAGGGCTTTTGAGCTTTCCTTTGCTTCTCTCTTCACTGTCTGAAGA
GGTGGATTACCTTCTTGCCTGAGAAAGGATGAACGTGAACATCAGCACGT
GAGTAAAACAAGCCATTGGCTTTAAGACAACTCTTCAAGCAATTTCTCAT
ATGCATAAAATATAGGATAAAAACAAAATAAGGGATACAGAAAGAAACAG
GAAAAAGAAGGTATTGTGTTACACCACCAACCCCGGGGAAGGGAGCAATT
AGAGTGTGAAGGTAATCAAAGAACATTATATCCGAGCATGGACAAGTCGA
TGTGATTAATAGATAATAATACTAACATTGTACACTTGATTGAATAGGAA
ATACTTAACAAAGAATGAGAAAAGAATGAAATAATGAACAATTGTACAAT
CGAGGAATGAAGAAAGACTTCTACACCAATGACTTTAAAAAGAAAAGACA
TTTNCATGAAATTTAAATATTATGTGGCAATATTTTAAAAGGTGAATGTA
CAATAGGGATGTTTTAAACACAACTTTTCTCTAATGGTGGGTTTATATAC
TTATACATATATTACCCCCACTTATTAACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_k09.g1 MSMg01no195_k09.g1 CHROMAT_FILE:
MSMg01no195_k09.g1 PHD_FILE: MSMg01no195_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:56 2005
         (289 letters)



>mm_chr13_88841998_88842686
          Length = 689

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcatcaaagtcagtagagatttcccttaaaataagtttttatacgtttgcaactgaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 485 agttcatcaaagtcagtagagatttcccttaaaataagtttttatatgtttgcaactgaa 426

                                                                       
Query: 61  attacagctcattttatccagggcttttgagctttcctttgcttctctcttcactgtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 attacagctcattttatccagggcttttgagctttcctttgcttctctcttcactgtctg 366

                                                                       
Query: 121 aagaggtggattaccttcttgcctgagaaaggatgaacgtgaacatcagcacgtgagtaa 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 365 aagaggtggattaccttcttgcctgagaaaggatgaacatgaacatcagcacgtgagtaa 306

                                                                       
Query: 181 aacaagccattggctttaagacaactcttcaagcaatttctcatatgcataaaatatagg 240
           ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 305 aacaagccattcgctttaagacaactcttcatgcaatttctcatatgcataaaatatagg 246

                                                        
Query: 241 ataaaaacaaaataagggatacagaaagaaacaggaaaaagaagg 285
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 245 ataaaaacaaaataagggatacagaaagaaagaggaaaaagaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)