BAC Information

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BAC

Clone NameMSMg01-195K23
Chromosome13 (Build37)
Map Location 119,386,802 - 119,471,049
singlet/doubletdoublet
Overlap genenone
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309
Downstream geneLOC100041278, Fgf10, LOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195K23.T7 (MSMg01no195_k23.b1)MSMg01-195K23.TJ (MSMg01no195_k23.g1)
ACCAG384105AG384106
length717711
length of high quality
(start - end)
320 (46 - 365)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no195_k23.b1 PHD_FILE: MSMg01no195_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:58 2005CHROMAT_FILE: MSMg01no195_k23.g1 PHD_FILE: MSMg01no195_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,470,734 - 119,471,049)(119,386,802 - 119,387,087)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAGAGAAAGTGAAGCTCTCCTCCAGAAGAGTACATAACACCGC
AACTCTGTTCCCTGACAGCAGGTTTTAGAACATTGGAAATTTCATGGCCT
GTTCCTTGATGCACCAAAGAAGATTATGATAAGAAGGTACTTGAGACAAA
CTGACATGGTAACTTGTATTCAAGAAAATATACAATAGGCATCTGAAAAT
TCACCACATGCCAGCGTGGCCTGTCAGTGTGACACTATCATTTTACAAGT
CAGGAACTAGGAATAGTAGTGTCAAAGGGAAAGAAATCATAGGGAGTTGC
TTTGTTCATTGGGGTATTTCTTTCCCCCCCCACGCGAGAATTTATATTTT
ATTTTATTTTTATTATAGTTGGTTCTAAGCTTCTCTCTTTGATTTATTTT
GCCTATGAAATATAAGCAGGAGAATAGCATATAATTCTCAACTTAAATAA
AGTACATAAGGTGTAACCATTCTGTGATTTCTTCTGTACTGCGCCTGCAT
TCTCGGAGAAAGACAGCTTCTTCTGTGACAATCCAAGAATGAAGGAACTG
GCAGAAAATATGAAGATGACCAGTAGAAAAAAAAGTCATAGAAATTAGAC
AAAAGCGTTTGTTATGTACACCACTGAAATATGGGCTTGTTTATTGTAAC
TATAGACTCTAGCAAAA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTGAGGTGGCTGGTGGTCTCC
TCATCCTGAGTTGGCTTCTAACTCATGATGGCAGAGGGCTTCTGGAAGAA
CACATAATCAACAGGGAATGTGGCTCCCAGGTGCATGGCCTTCACTCTGA
CATCTGGATCTACAGGGAAATGTAGGACAAAGCCATCAGCGTCTGTGAGT
GCTTCTCCAAGCTACCCTCCAAGCAACCCCTCACAGATGAGGCCCACTCT
TCAAGAACCATCCTTAGTCTTTATTTCAAAACTGGCCTCTGTATCACAAC
CGCACTTCCGGATTCCCCTCCCCTAAGACCAAGCTTGGTAATCAAAGTCT
AGGATAGAAAGTTTAGGAAGGATGAAAGAAAAAAAAAGTTGCACATGGTC
GGCAGTGGTCCCGAGTGGAGCATGTACTTCCGTGTCCTGAAGACCACATG
AACTGCAGCTGCAGCCACAGTGGAGTGGGTGGTGGAGGCAGGGAATTCCG
GATCCTCTGGGACTGCTAGGTGGACACAAAGCAGACAGTGGGTACCGCAG
AGCAGACCCACAGACAGACACAATGTTTGCTCTCTTCAGCTGCCTGACCG
GGATGCTCACAGTCCCAGAGTGCAACTGATTCCTATCACAAGTCTCCTAT
CCTAGGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_k23.b1 MSMg01no195_k23.b1 CHROMAT_FILE:
MSMg01no195_k23.b1 PHD_FILE: MSMg01no195_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:58 2005
         (320 letters)



>mm_chr13_119470530_119471249
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagagaaagtgaagctctcctccagaagagtacataacaccgcaactctgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcatcagagaaagtgaagctctcctccagaagagtacataacaccgcaactctgtt 461

                                                                       
Query: 65  ccctgacagcaggttttagaacattggaaatttcatggcctgttccttgatgcaccaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccctgacagcaggttttagaacattggaaatttcatggcctgttccttgatgcaccaaag 401

                                                                       
Query: 125 aagattatgataagaaggtacttgagacaaactgacatggtaacttgtattcaagaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aagattatgataagaaggtacttgagacaaactgacatggtaacttgtattcaagaaaat 341

                                                                       
Query: 185 atacaataggcatctgaaaattcaccacatgccagcgtggcctgtcagtgtgacactatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atacaataggcatctgaaaattcaccacatgccagcgtggcctgtcagtgtgacactatc 281

                                                                       
Query: 245 attttacaagtcaggaactaggaatagtagtgtcaaagggaaagaaatcatagggagttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attttacaagtcaggaactaggaatagtagtgtcaaagggaaagaaatcatagggagttg 221

                           
Query: 305 ctttgttcattggggt 320
           ||||||||||||||||
Sbjct: 220 ctttgttcattggggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no195_k23.g1 MSMg01no195_k23.g1 CHROMAT_FILE:
MSMg01no195_k23.g1 PHD_FILE: MSMg01no195_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:58 2005
         (289 letters)



>mm_chr13_119386602_119387290
          Length = 689

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttgaggtggctggtggtctcctcatcctgagttggcttctaactcatgatggcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttgaggtggctggtggtctcctcatcctgagttggcttctaactcatgatggcagag 260

                                                                       
Query: 61  ggcttctggaagaacacataatcaacagggaatgtggctcccaggtgcatggccttcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttctggaagaacacataatcaacagggaatgtggctcccaggtgcatggccttcact 320

                                                                       
Query: 121 ctgacatctggatctacagggaaatgtaggacaaagccatcagcgtctgtgagtgcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgacatctggatctacagggaaatgtaggacaaagccatcagcgtctgtgagtgcttct 380

                                                                       
Query: 181 ccaagctaccctccaagcaacccctcacagatgaggcccactcttcaagaaccatcctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagctaccctccaagcaacccctcacagatgaggcccactcttcaagaaccatcctta 440

                                                         
Query: 241 gtctttatttcaaaactggcctctgtatcacaaccgcacttccgga 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctttatttcaaaactggcctctgtatcacaaccgcacttccgga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)