Query= MSMg01no197_e09.b1 MSMg01no197_e09.b1 CHROMAT_FILE:
MSMg01no197_e09.b1 PHD_FILE: MSMg01no197_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:06 2005
(310 letters)
>mm_chr13_45241221_45241930
Length = 710
Score = 528 bits (273), Expect = e-154
Identities = 297/305 (97%)
Strand = Plus / Plus
Query: 4 ggaattcccaatctgaccgctgtctgggatagctaagtatttccctctttaacatgcatg 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccaatctgacccctgtctgggatagctaagtatttccctctttaacatgcatg 263
Query: 64 acttttgaaaccaaaatttgttttctcagctttgtgctttcccttaaatgtcctagtttc 123
||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actttggaaagtataatttgttttctcagctttgtgctttcccttaaatgtcctagtttc 323
Query: 124 caatctgaggatgttagctttctcttagctgttctgtttccatcttgaaactgcccctgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caatctgaggatgttagctttctcttagctgttctgtttccatcttgaaactgcccctgt 383
Query: 184 gtgcacgcccctgtgctttagggcattatggattctgaggagaggctaaggcaagattct 243
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgcatgcccctgtgctttggggcattatggattctgaggagaggctaaggcaagattct 443
Query: 244 gtccagctcttgagttttgacagcgtctttgttcttagtctttgtctcttaaggttttgc 303
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtccagctcttgagctttgacagcgtctttgttcttagtctttgtctcttaaggttttgc 503
Query: 304 attct 308
|||||
Sbjct: 504 attct 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_e09.g1 MSMg01no197_e09.g1 CHROMAT_FILE:
MSMg01no197_e09.g1 PHD_FILE: MSMg01no197_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:06 2005
(576 letters)
>mm_chr13_45356588_45357562
Length = 975
Score = 1006 bits (520), Expect = 0.0
Identities = 562/576 (97%), Gaps = 1/576 (0%)
Strand = Plus / Minus
Query: 1 aactcggatgctgtcactcgcaaaggtgacatttgagagattcattttctcgcaggcaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 775 aactcggatgctgtcactcgcaaaggtgacatttgagagattcattttct-ggaggcaac 717
Query: 61 aattacacaagagcattcaaggaggcagaaatcatgatcttggggaagaacaccttgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aattacacaagagcattcaaggaggcagaaatcatgatcttggggaagaacaccttgaat 657
Query: 121 gaattaatacaaggtggggtggcttctgttttgtttccctcttaaagtgctgatgtcaca 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 656 gaattaatacaaggtggagtggcttctgttttgtttccctcttaaagtgctgatgtcata 597
Query: 181 ccagttaccccatggtgggtgacaggctgctttagaagctgcttttgctaagaactacag 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ccagttgccccatggtgggtgacaggctgctttagaagctgcttttgctaagaactacag 537
Query: 241 tcccttctcttgtttccatgaggtaactaagagcaaggtgagagcctggtatctctgcct 300
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 536 tcccttctcttgggcccatgaggtaactaagagcaaggtgagagcctggcatctctgcct 477
Query: 301 tcattttgcatctgtgtgctttactttgggttagctgcttacctttgcacataggcatgc 360
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 476 tcattttgcatctgcctgctttactttgggttagctgcttacctttgtacataggcatgc 417
Query: 361 tattcaattatagagtgtctatctggaaactggttgcatagaacccatcccattgcccct 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 416 tattcaattatagagtgtctatctggaaactggttgtatagaacccatcccattgcccct 357
Query: 421 tcaaagcagaaagcacaaagagtaactgagacctgagactacttactgtcaactatttat 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 356 tcaaagcagaaagcacaaagagtaactgagacctgagacttcttactgtcaactatttat 297
Query: 481 aatggtctgtttcagaacctcttaaaggcatctaaatgccttagttggttgttgtaagtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 aatggtctgtttcagaacctcttaaaggcatctaaatgccttagttggttgttgtaagtg 237
Query: 541 tgccatcactttgggtgaaacacatggctgtatagt 576
||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgccatcactttgggtgaaacacatggctgtatagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
