BAC Information

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BAC

Clone NameMSMg01-197M12
Chromosome13 (Build37)
Map Location 114,905,258 - 114,905,541
singlet/doubletsinglet
Overlap geneArl15
Upstream gene1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneA430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197M12.T7 (MSMg01no197_m12.b1)MSMg01-197M12.TJ (MSMg01no197_m12.g1)
ACCAG385369
length710707
length of high quality
(start - end)
---284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no197_m12.b1 PHD_FILE: MSMg01no197_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:47 2005CHROMAT_FILE: MSMg01no197_m12.g1 PHD_FILE: MSMg01no197_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACCCAGAGCAGGACAACGCCCA
AATGCGCTCCCAGAAACAGTGCCCATGATCAGAGACATATCTAATACTAA
CATATCGACAGGATTGTCTCTGTGGCCTAGAGGCTTGTATAATAAAAACC
CTTAAATAAGATGGTATTTGGATTTTAGGAGAACCTACTAAGTATTTTGA
TAAACCTCTGAACATGCAGAGTGACTTTCTTTTCTTTTTTAAAGGTCATA
GAGGTGGCTCATCGCCATTTCTCCTAGGTTACTATACGAATGGCTGTGAC
ATCAGGACTAGCTTAACTTAACGTCTTCCCTGCCACACGCATGAGTGATT
GCCTGATATTAGCCCCCTGTGCACAGAATGAAGAAAGCATGCTTTAAAAA
CAGGCTGCACGTACTCTCCTGTGGGAAACATTTCTGCAAGTTTCACCCCG
TAATCTATTGCCCGGGTGTTCCAACGCTCTCAGAAGTCATAGCTGACTCT
TCACCCGGCACCAGGATGTGTGGCACTCACCGTTTGATAGTCTAATTATG
CCGTTTCCAGTTCATTAGCCCTGCCCTTCTTGTCTACCCCCGGTTGAAAG
CCCTCAAAATAGTATTTTCTTTCGATTTGGCGCAATCCTCCCTTCGCCTA
TTCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_m12.g1 MSMg01no197_m12.g1 CHROMAT_FILE:
MSMg01no197_m12.g1 PHD_FILE: MSMg01no197_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:47 2005
         (284 letters)



>mm_chr13_114905058_114905741
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacccagagcaggacaacgcccaaatgcgctcccagaaacagtgcccatgatcagagac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 484 atacccagagcaggacaacgcccaaatgcgctcccagaaacagtgaccatgatcagagac 425

                                                                       
Query: 61  atatctaatactaacatatcgacaggattgtctctgtggcctagaggcttgtataataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atatctaatactaacatatcgacaggattgtctctgtggcctagaggcttgtataataaa 365

                                                                       
Query: 121 aacccttaaataagatggtatttggattttaggagaacctactaagtattttgataaacc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 364 aacccttaaataagatggtatttggattttaggagaacctactaagtattctgataaacc 305

                                                                       
Query: 181 tctgaacatgcagagtgactttcttttcttttttaaaggtcatagaggtggctcatcgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctgaacatgcagagtgactttcttttcttttttaaaggtcatagaggtggctcatcgcc 245

                                                       
Query: 241 atttctcctaggttactatacgaatggctgtgacatcaggacta 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atttctcctaggttactatacgaatggctgtgacatcaggacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)