Query= MSMg01no198_b21.b1 MSMg01no198_b21.b1 CHROMAT_FILE:
MSMg01no198_b21.b1 PHD_FILE: MSMg01no198_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:14 2005
(689 letters)
>mm_chr13_48216082_48217169
Length = 1088
Score = 1193 bits (617), Expect = 0.0
Identities = 668/685 (97%), Gaps = 1/685 (0%)
Strand = Plus / Plus
Query: 5 gaattctacatcttcatctgaaggcactagaagactagcttccagacagctaggacgaga 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctacatcttcatctgaaggcactagaagactagcttccagacagccaggacgaga 264
Query: 65 gtattaaagcccacgcccacagtgacacacctactccaacaaggtcacacctcctaatag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtattaaagcccacgcccacagtgacacacctactccaacaaggtcacacctcctaatag 324
Query: 125 tgccactccctgggccaagcatgtgcaaaccatcacagtatgagtatgtgccaacgtttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgccactccctgggccaagcatgtgcaaaccatcacagtatgagtatgtgccaacgtttt 384
Query: 185 tctaagaatgtcttttctctcatggcagacttctttctgcacaaaggagcaatgttcaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 tctaagaatgtcttttctctcatggcagacttctttctgcacaaaggagcaatgttc-aa 443
Query: 245 ataagcaatttcttcacgtgattcctgctgtatagagtatgcaagaggatcccagatgtg 304
||| ||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 ataggcactttcttcacatgattcctgctgtatagaggatgcaagaggatcccagatgtg 503
Query: 305 gtccctaaacaactctctagttctttacttacaaaaccaactagaacaatatatggttgt 364
||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 504 gtccctaaacaactctctagttctttatttagaaaaccaaccagaacaatatatggttgt 563
Query: 365 gtaaatgcataacaactcgacacagtcagtgactgatattgcaacatatgactgcagttc 424
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 gtaaatgcataacaacttgacacagtcagtgactgatattgcaacacatgactgcagttc 623
Query: 425 acaggcttctgaaataaagactaagcctttacctgtatttttttaggtttaaaaattaat 484
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acagacttccgaaataaagactaagcctttacctgtatttttttaggtttaaaaattaat 683
Query: 485 caatgattccctttatttcttgttttgaaagttatttactatcttgtgtttaatttgcac 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 684 caatgattccctttatttcttgttttggaagttatttactatcttgtgtttaatttgcac 743
Query: 545 atcaacagtgtatcactggatcaatagctaactcagagatgtgagatcatgaattgatca 604
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atcaacagtgtatcactggagcaatagctaactcagagatgtgagatcatgaattgatca 803
Query: 605 tacttctaacatggactcacaaacagaagacagctatctccgatgctattcatgggcaag 664
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 804 tacttctaacatggactcacaaacagaagaaagctatctccgatgctattcatgggcaag 863
Query: 665 gaattgctggctcacaattgacata 689
|||||||||||| ||||||||||||
Sbjct: 864 gaattgctggcttacaattgacata 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_b21.g1 MSMg01no198_b21.g1 CHROMAT_FILE:
MSMg01no198_b21.g1 PHD_FILE: MSMg01no198_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:14 2005
(290 letters)
>mm_chr13_48316863_48317552
Length = 690
Score = 373 bits (193), Expect = e-108
Identities = 243/285 (85%), Gaps = 40/285 (14%)
Strand = Plus / Minus
Query: 1 caggctcgccacggatgcacagtgagatcctgtctcaacaaaacaaaacacaacaaaaca 60
||||||||||| ||||||||||||||||||||||||
Sbjct: 569 caggctcgccagggatgcacagtgagatcctgtctc------------------------ 534
Query: 61 aaacaaaacaaaacaaaacaaaacaaaacaaaacaaagcagaacaaagcagaacaaaacc 120
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 -aacaaaacaaaacaaaacaaaacaaaacaaaacaaagcagaaca--------------- 490
Query: 121 aaaccattcccacttgaagagatcatcatgaaactcagtcccctggctgatttctctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaaccattcccacttgaagagatcatcatgaaactcagtcccctggctgatttctctctg 430
Query: 181 tctattgccttcaggcttgcttgtgtttattctttctacatagtttcagtttctggcact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctattgccttcaggcttgcttgtgtttattctttctacatagtttcagtttctggcacc 370
Query: 241 tgtgccctctgtctgtctgacacagctctctggcaaccatgaagt 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgtgccctctgtctgtctgacacagctctctggcaaccatgaagt 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
