BAC Information

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BAC

Clone NameMSMg01-198C03
Chromosome13 (Build37)
Map Location 107,856,062 - 107,947,474
singlet/doubletdoublet
Overlap genenone
Upstream geneOlfr717-ps1, LOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
Downstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198C03.T7 (MSMg01no198_c03.b1)MSMg01-198C03.TJ (MSMg01no198_c03.g1)
ACCAG385585AG385586
length843717
length of high quality
(start - end)		274 (101 - 374)234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no198_c03.b1 PHD_FILE: MSMg01no198_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:15 2005CHROMAT_FILE: MSMg01no198_c03.g1 PHD_FILE: MSMg01no198_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,856,062 - 107,856,336)(107,947,241 - 107,947,474)
sequence
TACTAATCTACTTTTTTTTTATTTATATCCAAAACAAAAAAANNNNTTTT
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGTTTTTTCTTCCTTGTACTGATTTCTGAACACCAAACATCT
CACATCATCTTGGCAATTGCTTCTACAAAACCAAACTTTGACACCCATAA
AGCAATTCACTTTTAAAGCAGTTTTACCTTTGTGAAGGCATAACCCTTTA
TCTGTCACTTGAAGGTAGAATATATATGTATATTATATACTTGTAATTAA
TATATAGGCAGAATACACATAAATATATAAGTAAATTATATGAAATAAGT
ATATATAATAATTATATAGGAAGATCAGTTTCATGGATGTTTAATAGTAA
AAAGCTGTATATTATTTTTTTGTCCCCCCCCCTCCCCACCAGAAACAATT
CCTTTCTCATTTCAATGTTTACTAAAGTATAAAAAATGAATATTAAACAA
TAAGCTCCCTCTTTTCTAGCTTTTTCATTTGCCTAGAATTTCCAGACATT
TGACTGATTGATTCAAGGTTACTCCAAGATATTTTTATAGATATTTGAAG
CTACTTTGAAAAGTGTTATTTCCCCTACCATTTCATTTAGTCAGTGGATA
ACAAGAAAAGCTTACTGAATTTTCCCTGAGTCCAACTTTTAAATCCCACC
TAACTCTGCCCAAAAGCGTTCTTACAAAAAATCAAAGAATTTTCCTAATA
GGAAATTTTCTAGACCCACTTTCATATTTATTATAACACAACTCTCTTCT
TGCCTAATTATATTATATAACTTTGTAACCTTCTCTCCCCATC

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAACCAGGGTGGATACTTTGGTA
TTAAAATGAGACATGGGTGACTTTCCCACATTCTGGGGTACCCCTGTGCC
CATATCAGGGGCATAAGCCAGTTTGTTGTGATCTAAGCTGGAATTTTCAG
CTTTGCTCTTTGCCAACTTAACTTCCTCGTCTGCTGACTCTGCAGTCCTC
TCTCCCGGCCTTCTCTCCTTGCCTCCTTAGGAAGACCCAAGCCTCCTATG
GGTGAGATTTAACTTGCTTCCCACTCTCCTTAGAAGGTGCGTAAAGGTGA
ACTTTCTTACCTTCTGTTTCCTGCCACCCCCTCGGCGAACAAGCCCAAGA
CCCAGTTCAAGGATAGTCGCCCGTAGTCCATAAGACTCTTGGCTCGCTAG
TGATACGAGTTAGAATTGCAGACCCACCATGTGCTTTATTGGCCTTGGAC
AAAGCTGATGAGTCTCCCTGCTCATTCAGAGGAAAGCTAGTGAATTTACA
ATAGGACCCAGTTACTTTCTGGCTGTCTCCCAGTGACACCTCTGCCCTCC
TTTTCCGCCATGTGCTACTAGCTCAATAATACTACAAGTCACATTTCCCA
GGAATCCTCGCTGCCTATTTTCTGTGGACAGCGAATATTTTACTGAGAGC
TGGGGTTACATCCCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_c03.b1 MSMg01no198_c03.b1 CHROMAT_FILE:
MSMg01no198_c03.b1 PHD_FILE: MSMg01no198_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:15 2005
         (274 letters)



>mm_chr13_107855862_107856536
          Length = 675

 Score =  509 bits (263), Expect = e-149
 Identities = 272/275 (98%), Gaps = 1/275 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctctgttttttcttccttgtactgatttctgaacaccaaacatctcacatcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctctgttttttcttccttgtactgatttctgaacaccaaacatctcacatcatct 260

                                                                       
Query: 61  tggcaattgcttctacaaaa-ccaaactttgacacccataaagcaattcacttttaaagc 119
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tggcaattgcttctacaaaacccaaactttgacacccataaagcaattcacttttaaggc 320

                                                                       
Query: 120 agttttacctttgtgaaggcataaccctttatctgtcacttgaaggtagaatatatatgt 179
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 agttttacctttgtgaaggcataaccccttatctgtcacttgaaggtagaatatatatgt 380

                                                                       
Query: 180 atattatatacttgtaattaatatataggcagaatacacataaatatataagtaaattat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattatatacttgtaattaatatataggcagaatacacataaatatataagtaaattat 440

                                              
Query: 240 atgaaataagtatatataataattatataggaaga 274
           |||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaaataagtatatataataattatataggaaga 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space:   176490
Effective search space used:   176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no198_c03.g1 MSMg01no198_c03.g1 CHROMAT_FILE:
MSMg01no198_c03.g1 PHD_FILE: MSMg01no198_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:15 2005
         (234 letters)



>mm_chr13_107947041_107947674
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattctggggtacccctgtgcccatatcaggggcataagccagtttgttgtgatctaag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 434 acattctggggtacccctgtgcccatatcaggggcataagccagcttgttgtgatctaag 375

                                                                       
Query: 61  ctggaattttcagctttgctctttgccaacttaacttcctcgtctgctgactctgcagtc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 374 ctggaattttcagctttgctctttgccaacttaacttccttgtctgctgactctgcagtc 315

                                                                       
Query: 121 ctctctcccggccttctctccttgcctccttaggaagacccaagcctcctatgggtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctctctcccggccttctctccttgcctccttaggaagacccaagcctcctatgggtgaga 255

                                                                 
Query: 181 tttaacttgcttcccactctccttagaaggtgcgtaaaggtgaactttcttacc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttaacttgcttcccactctccttagaaggtgcgtaaaggtgaactttcttacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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