BAC Information

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BAC

Clone NameMSMg01-198K21
Chromosome13 (Build37)
Map Location 94,085,433 - 94,085,762
singlet/doubletsinglet
Overlap geneHomer1
Upstream geneMsh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4, LOC100039163
Downstream geneJmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198K21.T7 (MSMg01no198_k21.b1)MSMg01-198K21.TJ (MSMg01no198_k21.g1)
ACCAG385905AG385906
length824747
length of high quality
(start - end)
318 (101 - 418)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no198_k21.b1 PHD_FILE: MSMg01no198_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:59 2005CHROMAT_FILE: MSMg01no198_k21.g1 PHD_FILE: MSMg01no198_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACATTATAATAAAAAAAAACTAAGTTTTAAATAATTAAAATATCCNCNCC
TATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGCATCCCTCAGTAAGGTCACTATAGCAGCAGCAGCAGCA
GCACCACCTGCAAATTCATTAGCACAATTTGTTGGCCTACTCTTAGACCC
ACTGAATAAAAACCTCTGAAGGTAAAGAAAACCTAACAAGCCCTCTTGGT
GATGCTGATACAGGCTCACAATTGAGAACTACTAATCTGGTTTTAATTTC
TGCCAGTATCATACTATAACAAAGTTTTCTTCCTGCTGTAGCCAAGGTAA
TGCATTTCAAAACTGTATCTGATCTAACACACCTCAACTGCTGTAAAAAT
GGTAATGATAATAATAATATTTTGCACCCCCCCCCCCACATCAGGCTAGA
GCTGTGTTTCTTTGACTAGAGGTTTTTAGGACAATGAGTTTAGGGTGTGG
ATGGTCTTCTTCCTTTTCTCCAAGGGGTCCACTAACCCTACCCCCCTTTT
TACCTAACCCCAACCATGTGGATGGTTCCGAACCGGCACTAACGGGCCTC
CACCCAAGAAGTTCCCTTGCTGTGATGTATCTCTCCTTCATTAAAGTTTG
CTCTTTGGATACCCTCTACTTTTTCTCTTCCTTTTTAAAAACACATTTCT
CCTCTATCTTTTCATATTTCTTATTAAAGAATATACTCCATCGATAATAC
ATTTTCTATTCTACTAACATCTCACAACACATCACTCATCTATTTATATA
GTCATGAATTTCATCACTCCCAAG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCATAACGACACACTATTGGCTTAT
TCAAACATCAGCAGAAAAATTACTGTACGTGCAGGGTGTCAGAGTTCTGT
GAGTTGTTGACTCAGTTTAGATAGCCCTGTTATATCTTCACATTCCCCTT
TATCTTATGGTCAAGATGTTCCCAGGAATGCTTTAACTACGGGGCATACC
CAGGTTTGTTTTTCTTTTTTCTCAGACCCAGACAGCCTCTAGGCTCAAAA
ACAACCAGCAATTTCTGAGTACTTTATATGACTTATAGGTCTTGAAATTT
CATCTTTCTTTCTGAGTCNTTCTCNNATCATTCGCAGTCTGTTGGTGATG
CTCATGTCTGTGATGTCTGGTCTCTTCAAAAAAAATACTATCTCCAGGGT
TGTCTCCCTTTGTGATTTCTTTATTGTTTCAATTTCCATCTTTATATCCT
GGATGGTTTTGTTCAATTCCTTCAACTGTTTGTTTGTGTTTCCTGGTAAT
TATTTAAGAGATTTTTGTGTTTCTTCCTTAAGGGTTTCTACCTGTTTACC
TGAGTTCTCCTGTATTTCTTTAAGGGAGTTATTTACGTCCTTCTTAACAT
CCTCTATCATCATCATCATGAGATGTGATTTTAAATCAAAGTCTTGTTTT
TCCAGTGTGTTGGGATATCCAGGCCTTGCTGTGGTGTGAGAACTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_k21.b1 MSMg01no198_k21.b1 CHROMAT_FILE:
MSMg01no198_k21.b1 PHD_FILE: MSMg01no198_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:59 2005
         (318 letters)



>mm_chr13_94085050_94085767
          Length = 718

 Score =  569 bits (294), Expect = e-166
 Identities = 314/330 (95%), Gaps = 15/330 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcatccctcagtaaggtcactatagcagcagcagc---------------ag 48
           |||||||||||||||||||||||||||||||||||||||||||               ||
Sbjct: 713 ggaattcagcatccctcagtaaggtcactatagcagcagcagcagcagcagcagcagaag 654

                                                                       
Query: 49  cagcaccacctgcaaattcattagcacaatttgttggcctactcttagacccactgaata 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 cagcaccacctgcaaattcattagcacaatttgttggcctactcttagacccactgaata 594

                                                                       
Query: 109 aaaacctctgaaggtaaagaaaacctaacaagccctcttggtgatgctgatacaggctca 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aaaacctctgaaggtaaagaaaacctaacaagccctcttggtgatgctgatacaggctca 534

                                                                       
Query: 169 caattgagaactactaatctggttttaatttctgccagtatcatactataacaaagtttt 228
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caattgagaactactaatctgattttaatttctgccagtatcatactataacaaagtttt 474

                                                                       
Query: 229 cttcctgctgtagccaaggtaatgcatttcaaaactgtatctgatctaacacacctcaac 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttcctgctgtagccaaggtaatgcatttcaaaactgtatctgatctaacacacctcaac 414

                                         
Query: 289 tgctgtaaaaatggtaatgataataataat 318
           ||||||||||||||||||||||||||||||
Sbjct: 413 tgctgtaaaaatggtaatgataataataat 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)